Phragmites australis (common reed): 133888697
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Entry
133888697 CDS
T10575
Name
(RefSeq) cryptochrome-1-like isoform X1
KO
K12118
cryptochrome 1
Organism
paua Phragmites australis (common reed)
Pathway
paua04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
133888697
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GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
Cryptochrome_C
Motif
Other DBs
NCBI-GeneID:
133888697
NCBI-ProteinID:
XP_062185013
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Position
13:19031103..19035131
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AA seq
682 aa
AA seq
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MSVSSSSMCGGDAGMRSVVWFRRDLRVEDNPALAAAARAGGEVVPAYVWSPEEDGPYYPG
RVSRWWISQSLKHLDASLRRLGAGKLVTRKSADAVVALLQLVRDTGATHLYFNHLYDPIS
LVRDHRLKEMLTAEGIIVQSFNADLLYDPWEVVDEEGQPFIMFAPFWNRCLSMLYDPPAP
LLPPKKINSGDLSMCPSDDLIFEDESERGSNALLARAWSPGWQNADKALSAFLNGPLADY
SVNRMKADSASTSLLSPHLHFGELSVRKVFHLVRMKQLVWSNEGNHAAEESCTLFLRSIG
LREYSRYLSFNHPFSHERPLLTHLRFFPWVINECYFKIWRQGRTGYPLVDAGMRELWATG
WLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGSLPDGRELDR
IDNPQLEGYKFDPHGEYVRRWIPELARLPTEWIHHPWDAPVSVLQAAGIELGSNYPLPIV
ELDAAKDRLQEALSEMWQLEAASRATLNNGMEEGLGDSEVPPIEFPQELQMEVDRQPAQA
TANVLVTARRREDQMVPTMTTSLNRAETEVSAGEDSVARINGVHRHNIIQQPQHRRRDIL
APSVSEASSSWTGREGGVVPVWSPPAASGHSETSAADEADIASRSYLDRHPQSHQLMNWS
QLSQSLTTCWEVENSVQPNLTG
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtctcgtcatcgtccatgtgcggtggggacgccgggatgaggagcgttgtgtgg
ttccggagggacctcagggtggaggacaacccggcgctggcggcggcggcgcgcgccggt
ggggaggtggtgccggcgtacgtgtggtcgccggaggaggacggcccgtactacccgggg
cgcgtgtcccggtggtggatcagccagagcctgaagcacctggacgcctctctccgccgg
ctcggagcaggcaagctcgtcacccggaagtcggccgacgctgtcgtcgcgctgctccag
ctcgtccgcgacaccggcgccacgcacctctacttcaaccatctatatgatccgatctca
ctggtcagggaccaccggctgaaggagatgctaacggcggagggcatcatcgtgcaatct
ttcaatgcagacctgctgtacgacccgtgggaagtcgtcgacgaggaaggccaaccattc
atcatgttcgcgccgttctggaacaggtgcctcagcatgctgtatgatccgcccgcgcca
cttctgcccccgaagaagatcaattcaggtgacttatcaatgtgcccatcagacgacctt
atctttgaggatgaatcggagaggggaagcaatgctcttctggcacgagcatggtcaccc
gggtggcagaacgcagataaggcgctgtcggctttcctgaacggtcctttagcagactat
tccgtgaaccgcatgaaggcagatagtgcaagcacatccctcctttcacctcacctgcat
ttcggtgagcttagtgtgcgcaaggtcttccacctagttcgaatgaagcagcttgtgtgg
agcaacgagggcaaccatgctgccgaggagagctgcaccctgttcctccgttccattggc
ctgcgggagtactcacggtatctgagcttcaaccatccgttcagccacgagaggcctctc
ctgacgcacctcaggtttttcccctgggtgatcaatgagtgctacttcaagatttggcgc
cagggaaggactgggtatcctcttgtcgatgccggcatgagggagctgtgggcgacaggg
tggttgcatgacaggatacgcgtggtggtgtcaagcttctttgtcaaggtccttcaacta
ccatggcgatggggtatgaagtatttttgggacactttactagatgctgatctcgagagc
gatgcactgggctggcagtacatcactggctctcttcctgatggccgagagcttgaccgt
attgacaaccctcagcttgaaggctacaagttcgacccacatggggagtacgtccgacgg
tggattcctgagctcgcaaggcttcctacggaatggatacaccacccatgggatgcacct
gtgtccgtgctgcaagcagcaggtattgagttgggctccaactaccctctccccatagtt
gagctagacgcagccaaagacaggcttcaagaagccctgtcagaaatgtggcagctggag
gcagcatcaagggccacactgaacaatggaatggaggaaggccttggcgactcagaggtc
ccaccgattgagttccctcaagaactacagatggaagtcgatcggcagccagcccaggca
acagccaatgtgctggtgactgctcggagacgcgaggatcagatggtacctaccatgaca
acttctctgaatagagctgaaacggaggtttctgccggtgaggacagtgtggctagaatc
aatggcgttcaccggcacaacatcattcagcaacctcagcaccgtaggcgagacattctt
gcgccatctgtttcagaggcttcgagtagctggacagggagagaaggtggtgtggtccca
gtttggtcgcctcctgcagcatcaggccattcagaaacttctgctgccgatgaagctgac
attgctagtaggagttatttggataggcatccacagtcgcaccagttgatgaactggagt
cagctatcacagtcattgacaacatgctgggaggtggaaaattccgtgcagccaaactta
actggttag
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