Phragmites australis (common reed): 133889918
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Entry
133889918 CDS
T10575
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
paua Phragmites australis (common reed)
Pathway
paua03013
Nucleocytoplasmic transport
paua03015
mRNA surveillance pathway
Brite
Enzymes [BR:
paua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
133889918
5.6.2.5 RNA 5'-3' helicase
133889918
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
133889918
mRNA cycle factors
Common to processing body (P body) and stress granule
133889918
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NCBI-GeneID:
133889918
NCBI-ProteinID:
XP_062186323
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Position
14:complement(18698517..18709206)
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AA seq
1273 aa
AA seq
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MATLPPSSAAVAADLYETASQPDPSAGDAYTFLEFNTQGDDFDYPDFPELSQPTARSTLL
PPAPAPAASSSSSSWPAPPLPPHDAASPDPDLAPQDAPTQPASSSSPSPRSASKARSAVA
EGLAAGVAALSFEEPPGAGAGEDGYDYGKGDFVEHACRYCGIHNPACVARCNVPSCRKWF
CNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKAENV
VVLLCREPCLSVNALKDMNWDLSQWCPLIDDRCFLSWLVKVPSEQEQLRARQISAQQINK
VEELWKANPDASLEDLEKPGVDDEPQPVVLKYEDAYQYQNVFAPLIKLEADYDKMMKESQ
SKDNVTVRWDIGLNKKRVAYFVFPKEDNELRLVPGDELRLRFPGDSSHPTWQSVGHVIKL
TAQEEVALELRASQGVPVELNTGFSVDFVWKSTSFDRMQGAMKSFAVDETSVSGYIYHHL
LGHEVEHQIIRNTLPRRFGAPGLPELNASQVLAVKSVLQKPISLIQGPPGTGKTVTSAAI
VYHMAKQGQGQVLVCAPSNVAVDQLAEKISSTGLKVVRLCAKSREAVSSPVEHLTLHYQV
RHLDSSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREILQSADVICCTCVGAGDP
RLSNFRFRQVLIDESTQATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQS
LFERLVILGVKPFRLQVQYRMHPCLSEFPSNCFYEGTLQNGVTVNERQSSGIDFPWPVPN
RPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYI
VNYMSRNGSLRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVAL
TRARYGIVILGNPKVLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDR
RLFLGGGQGVMHGASFGAVASNPAADKRSGRGKGQSFVPFGPPNGAHKPGVHPAGYPVPR
MPFPPFPGAPHSQPYAIPTRGSLHGPIGAVPPVPQPGSRNFGAPRSSTGGPIGGHLAHQQ
NSQQAMGGIASTYNFTGLENPSSQPSAGGQMSQTGLMTQMPVQGLSQTFRDGFSIGGMSQ
DFFGDDFKSQGSHVPYNIADFSTQASQGGYGVEFTQAPQSGYSGNYLNQSAHPGYSHMGT
TNDIVSQDHMAHGSHGMFTQVGYNDPSQDESSQMHFGMAAHGPLQSQSMMNPLYSQSYAH
YNTQPQSLQPPPQ
NT seq
3822 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgctgccgccctcctccgccgcggtcgcggctgacctctacgagacggcctcg
cagccggacccttccgccggcgacgcctacaccttcctcgagttcaacacgcagggcgac
gacttcgactaccccgacttcccggagctctcccagcccaccgcccgatccacgctgctg
cctcctgcccccgcccccgccgcgtcgtcctcctcctcgtcatggccagccccgcccctg
ccgccgcacgacgccgcctccccggaccccgatctcgcgccgcaggacgcccccacacag
ccggcctcatcctcctcgccgtcgccgcgatccgcctccaaggcgcgctcggcggttgct
gaagggctcgcagctggggtcgcggcgctcagcttcgaggagccgcccggcgccggcgcg
ggagaggacgggtacgactacggcaagggcgacttcgtcgagcacgcctgccggtactgc
gggatccacaaccccgcgtgcgtggcgaggtgcaacgtaccctcctgccgcaagtggttc
tgcaactcgcgggggaacacctccggctctcacattgttaaccacctggttagggcaaag
cataaggaagtgtgccttcacaaggatagccctttgggagaaacaattcttgagtgctat
aactgtggttgtcggaatgtatttcttcttggatttatctcagcaaaggcggagaatgtt
gttgttcttctgtgcagagagccatgtttgagtgttaatgcattgaaggatatgaattgg
gatctcagtcagtggtgtcctcttattgacgacaggtgtttcttgtcatggcttgtaaag
gttccctcagaacaggaacagctgagagctcgtcagattagtgctcagcaaattaacaaa
gtggaagagctctggaaggcaaatcctgacgcctctcttgaagatcttgaaaagcctggt
gtagatgatgaaccccagccagtggttttgaagtatgaagatgcttaccagtatcaaaat
gttttcgctccgctgataaagctcgaggctgattatgacaagatgatgaaagagtcgcag
agcaaggataatgtaactgtgcggtgggatattggactgaacaagaagcgcgtagcttat
tttgtctttccaaaggaagataatgaattgaggcttgttcctggagatgagctacgcttg
agatttcctggtgatagttcacaccccacatggcagtctgtgggacatgtgattaagctc
actgcacaagaggaggtggcacttgagcttcgtgctagtcagggggtccctgttgaatta
aacaccggattcagtgtggattttgtttggaagagtaccagctttgataggatgcaagga
gcgatgaaatcttttgctgtagatgagacaagtgtcagtgggtacatataccatcacctt
ttgggacatgaagtcgagcatcaaataatacgtaataccctaccaagacgctttggtgca
ccaggacttccagaattaaatgcttcccaggtcttagcagttaaaagtgtcctccagaag
ccaattagtttgattcaaggtccacctggcactggaaaaactgtcacatctgctgcaatt
gtgtatcacatggcaaagcaaggtcaaggacaggtccttgtatgtgcaccaagtaatgtt
gctgttgatcagctagcagagaagataagctcaactggtctcaaggttgttaggctgtgt
gcaaaatctagagaagctgtttcatctcctgttgagcatctgacacttcattatcaggtt
cggcaccttgattcatctgaaaagagcgagttgcataagctacagcaattgaaagatgaa
caaggtgaattgtcgagcagtgatgagaaaaagtacaaggcactaaaacgagccactgaa
agagagatactacaaagtgctgatgtcatttgctgcacctgtgttggtgctggagatcct
cgtctgtcaaacttccgtttccgtcaagttcttattgacgagtccacgcaggcaacagag
cctgaatgtcttattccattggttcttggtgtcaagcaggttgttcttgtcggagatcac
tgccaactgggtccagtcatcatgtgcaaaaaagcagcccgtgcagggttagcacaatct
ctctttgaacgtcttgttatccttggcgtgaagccattcaggctacaggtccaatataga
atgcatccttgcctctcagaatttccgtccaactgcttctatgaaggcacactgcaaaat
ggagtaactgtaaatgagaggcaatcatctggaattgattttccttggcctgttccaaat
cggcctatgttcttctacgtgcagatgggacaagaagagatcagtgctagtgggacatca
tacctcaatagaactgaagctgcaaatgttgaaaaaattgtaacaacatttttaagaagt
ggtgttgttccaagccagattggagttatcacaccgtatgaaggacaaagggcatacatt
gtaaattacatgtcaaggaacggctctcttcgccaacaactttacaaggaaattgaggta
gctagtgtagactcatttcagggaagagagaaagactacattatcctgtcttgtgttaga
agcaatgagcaccagggtattgggtttcttaatgatccacgcaggttaaatgttgcatta
actcgtgcacggtatggcatagttattcttggtaatcctaaagttttaagcaagcagccg
ctttggaatagcttgttgacacattacaaggagcatgaatgcttggttgaaggacctttg
aacaacttaaagcagagtatggtgcaatttcagaagccaaaaaagatctacaatgatcga
agactgttcctgggtggtggtcaaggtgttatgcatggagctagctttggggccgtggcc
tcgaacccggcagcagataagagaagcggtagaggaaaagggcaatcctttgttcctttt
ggccccccaaatggggctcataaacctggtgtgcacccagcaggctatcctgtaccgcga
atgccctttcctccatttcctggggctccacattctcaaccatatgcaattccaaccagg
ggatcattgcatgggcccattggagctgttccgccggtgcctcaacctgggagtagaaac
tttggggcccctcgttcaagtactggtggtcctattggtggccaccttgctcatcaacag
aactctcaacaagctatgggtggcatagcgtcaacttataactttactggcttggagaat
ccgagcagtcagccttctgctggaggtcaaatgtcccaaactgggttgatgacacagatg
ccagtccaaggtctcagtcaaacattccgcgatggtttttccattggtgggatgtctcag
gacttttttggagatgattttaagagccaaggatctcatgtgccgtacaacattgcagat
ttttctacccaggcttctcaaggaggttatggtgttgaatttactcaagcaccccaatct
ggatactctgggaattatttgaaccaaagtgcacatccaggatactcccatatgggtaca
acaaatgacattgtatctcaggatcacatggcccatggatcacatggaatgtttacacaa
gtgggatacaatgatccctcacaagatgaatcatctcagatgcattttggaatggctgct
catggaccccttcagtcacagagcatgatgaacccgctctactctcaatcatatgctcac
tataacacccaaccacagtctcttcaaccccctccgcagtga
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