Phragmites australis (common reed): 133890392
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Entry
133890392 CDS
T10575
Name
(RefSeq) exosome complex component RRP41-like
KO
K12587
exosome complex component MTR3
Organism
paua Phragmites australis (common reed)
Pathway
paua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133890392
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133890392
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
133890392
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Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
133890392
NCBI-ProteinID:
XP_062186762
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All DBs
Position
14:27873953..27877493
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AA seq
231 aa
AA seq
DB search
MQAEKNPSKATGDRSISLQQCSEWGAGDPGSVALLLFDQAAGDMRRERREELRRHLTEDA
DWHRADGRSFHDCRPAFMQAGPTTAASGSAYAEFGKTKVIVSVDYLCRFGPRESKKAMMY
SDVGRLNCNVSYTTFATPVRGQGSDNKEYSSILHKALEDAGIMMYDLATSVSVNIIIDPT
SDEEAWQDGSLMVAFMPARKEITQLTLNGEWSDGKITFALSTALSEMIPKQ
NT seq
696 nt
NT seq
+upstream
nt +downstream
nt
atgcaagcagagaaaaaccctagcaaagccacaggggacaggtccatcagtctccagcag
tgcagcgagtggggcgcgggcgaccctggttccgttgcgctgcttttgttcgaccaggcg
gccggggacatgcggcgggagaggagggaggagctgcggcgccacctcaccgaggacgcc
gactggcaccgcgccgacggccgctccttccacgactgccggcccgcatttatgcaagca
ggaccaactactgctgcatcagggtctgcttatgcggaattcgggaagacgaaggtcatt
gtatcggttgattacctttgcaggtttgggccaagagaaagtaagaaagcaatgatgtac
agtgatgttggtaggctcaattgcaatgtgagctatacaacatttgccactccagtgcgt
ggacagggatcggacaacaaagagtactcatcaatacttcataaagctttggaagatgct
ggaatcatgatgtatgaccttgctacatctgtatccgtgaacatcatcatcgatccaacc
tcagatgaggaagcatggcaagacggaagccttatggtagcttttatgccagcccgcaag
gagatcacacaacttacgctcaatggagagtggtctgatggcaaaatcacgtttgcctta
tctacggcactatcagagatgataccaaagcagtga
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