Phragmites australis (common reed): 133890714
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Entry
133890714 CDS
T10575
Name
(RefSeq) DNA mismatch repair protein MSH4 isoform X1
KO
K08740
DNA mismatch repair protein MSH4
Organism
paua Phragmites australis (common reed)
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
paua03036
]
133890714
Chromosome and associated proteins [BR:
paua03036
]
Eukaryotic type
Meiosis-specific proteins
Others
133890714
BRITE hierarchy
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GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
AAA_22
AAA_27
Herpes_UL52
AAA_29
Motif
Other DBs
NCBI-GeneID:
133890714
NCBI-ProteinID:
XP_062187201
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Position
14:18151417..18168214
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AA seq
803 aa
AA seq
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MEDAAAGAAPGGGGGGDRSSFVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSCSYHNT
KTLLHFYDPMVVIVPPNKTAADGMVGVSEMVGKHYPANKKITMARGCFDDTKGAVMVKNL
SARDPSALGLDTYCKQYYLCLAAASATVKWIESEKGVFITNHSLSVTFNGSFDHMNIDST
SVQTLEIIDPLHTELWGTSNKKKSLFQMLKTTKTTGGARLLRANLLQPLKDIQTINARLD
CLDELMSNEELFFGLTQGLRKFPKESDKVLCHFCFKPKKVTDEVLKPANGRKSQMLISDI
IVLKTALDAIPFLSKVLKGAKSFLLCNIYQTVCENLKYENMRKRIGDVIDEDVVHSRAPF
VSCTQQCFAIKAGIDGLLDVARRSFCETSEAIHNLANKYREEYNMPNLKIPYNNRQGFYF
IIPQKDITDRLPNKFIQVVRHGKNVHCSSFELASLNVRNKSAAAECFLRTELCLEGLIDE
IRENIGILTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPEFTDDGPMAINAGRHPILES
LHTDFVPNNIFLSEASNMVLVMGPNMSGKSTYLQQICLIAILAQIGCYVPAQFASLRVVD
RIFTRIGNGDNVENNSSTFMTEMKETAFIMQNVSSKSLIVVDELGRATSSSDGLAIAWSC
CEYLLSFKAYTVFATHMEGLSELATMYPNVKILHFEVDLRNDRLDFKFRLKDGVRRVPHY
GLLLARVAGLPGSVIDTATSITSRITEKEMARMDANCEEFRSLRLAYQVAQRLVCLKYSN
QGDDYVREALQNLKESYAAGRLT
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgccgccgccggagccgcccctggcggaggaggcggcggagacaggtcgagc
ttcgtgatcggcctcatcgagaaccgcgccaaggaggttggcgttgcggcctttgatttg
agatcagcctcactgcacctatctcagtatatcgagacaagttgttcataccacaataca
aagacactacttcatttctacgatcctatggttgtcattgtgcccccaaacaaaacagca
gcagatggtatggttggagtttcagagatggttggtaaacattacccagcaaacaaaaag
atcacaatggcacgtgggtgctttgatgatacgaagggtgctgttatggtgaaaaatctt
tcagctagagacccctctgcacttggtttagatacttattgtaagcagtattatctttgt
cttgcggccgcctctgcaacagttaagtggatagaatcagaaaagggtgtatttattacc
aaccactcattatcagttacattcaatgggtcatttgaccatatgaacattgactcaact
agtgttcaaacactggaaattattgatcctctccatactgaactatggggcactagcaac
aaaaagaaaagcctctttcagatgttgaagactacaaagactacaggaggagctagacta
ctgagagccaacttattacaaccattaaaagatattcagaccatcaatgctcggctggac
tgcttggatgagctaatgagcaacgaagaactgttttttggattgactcaaggtcttcgt
aagtttccaaaagaatcagataaggttctctgtcatttctgcttcaagcccaaaaaggtt
acggatgaggtattgaagcccgccaatggtagaaaaagccagatgctgatttctgatatt
attgttctaaaaactgccctggatgccataccattcttatccaaggttttgaagggggca
aagagttttcttctttgcaacatttatcaaactgtatgtgaaaaccttaagtatgaaaat
atgagaaagagaattggagatgtcattgatgaggatgtggttcattcaagggctccattt
gtatcctgcactcagcaatgttttgctattaaggcaggaattgatgggctacttgatgtt
gctcgccgatctttctgtgaaaccagcgaagcaatacacaaccttgccaacaagtacagg
gaagaatataatatgccaaatttgaagataccctataacaataggcaaggattttacttt
attataccccagaaggacattactgatagacttcctaataaatttatccaggttgttaga
catgggaagaatgtccactgctcaagctttgagcttgcttcactaaatgttaggaacaag
tcggctgctgctgagtgcttcttgcgcacagaactttgtttggaaggacttattgatgag
atcagagaaaacattggtatccttacgttgcttgctgaagtattgtgtctattggacatg
attgtgaattcttttgcacatacaatatctacaaagcctgttgatcgctacacaagacca
gagttcacagatgatggtccaatggcaatcaatgccggacgacatcctattctggagagc
ttgcatactgattttgttcctaacaatatctttctttctgaagcatctaacatggttctt
gtcatggggccaaatatgagtgggaaaagtacatatctccaacagatctgtttaattgcc
attcttgcccaaattggctgttacgtcccagctcagtttgcatcattaagagtggttgat
cgcatattcacacggattggtaatggggacaatgttgaaaataactcgagcacgtttatg
acagaaatgaaagagacagctttcatcatgcaaaatgtttcttcaaagagcctgattgtt
gtggatgagcttggaagagccacctcttcctctgatgggttggcaattgcatggagctgc
tgtgaataccttctttctttcaaagcgtacactgtttttgccacgcatatggagggcttg
tcagaacttgcaactatgtatccaaatgtgaagatcctccattttgaagtcgacttgaga
aatgaccgcttggatttcaagttccgcctgaaggatggcgtccgacgggtaccgcactat
gggcttctgctagccagagtggctggtctccctggttcggtgattgacactgcgacgagc
atcacttcacggatcacagagaaggaaatggcaaggatggatgccaactgcgaggagttc
cggtcgctccggttggcttaccaggttgcacaacggctcgtctgcctgaagtactcgaac
caaggcgacgactacgtccgtgaagcgctgcagaatctcaaggagagctatgctgcaggc
cggttaacatga
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