Phragmites australis (common reed): 133890812
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Entry
133890812 CDS
T10575
Name
(RefSeq) mRNA-decapping enzyme-like protein isoform X1
KO
K12611
mRNA-decapping enzyme 1B [EC:3.-.-.-]
Organism
paua Phragmites australis (common reed)
Pathway
paua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133890812
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133890812
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133890812
mRNA degradation factors
5'-3' decay
Decapping complex
133890812
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DCP1
WH1
Motif
Other DBs
NCBI-GeneID:
133890812
NCBI-ProteinID:
XP_062187361
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Position
14:11198773..11204976
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AA seq
386 aa
AA seq
DB search
MAHGGGGGRAKVTPNLAMDGEGTRTLNLTVLQRLDPSVEDILITAAHVTLYDFDTDINQW
SRKDVEGSLFVVKRNAQPRFQFIVMNRRNTDNLVEDLLGDFEYQLQVPYIMYRNAAQEVI
GIWFYNSQECQEVANLFSRILNAFSKVPPKPKIPSIESEYEELEAAPALVEGPLEPPTSN
IISTTTHVQEDPLSAFFSQAAANAGGSSGVVVAGQPNQSFSATPLSTHAPTSITTSQSPA
LHHLLPSQTSSASGIPTDVHGGTGPIVRSTNLVNPSLFSPLTSSQTTMVPGNYVVPTAPP
QHPRTTQQPQSAPLLHPFPLPTASPSPPYGTPLLQPFPPPNPSPSLASAPVYPPVLSRDI
VRDALLRLVQNDEFIDLVYQEIVNNN
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
atggcccacggcggcggcggcgggagggcgaaggtgacgccgaacctggcgatggacggc
gagggcacgcgaacgctcaacctcaccgtgctccagcgcctcgacccctccgtcgaggac
atcctcatcaccgccgcgcacgtcacgctctacgatttcgacaccgacatcaaccagtgg
agccggaaggacgtggaggggtcgctcttcgtcgtcaagaggaatgctcaacctagattc
cagttcattgtcatgaatcgccgaaatacagataatctagttgaagatctcttaggagat
tttgaataccagcttcaagttccttatataatgtaccgcaatgctgcacaagaagttatt
ggaatttggttttataactcccaggagtgtcaagaagttgcaaatctttttagcaggata
ttgaatgcattctccaaggtgcctccaaagccaaagattccttctattgaaagtgaatat
gaagagctggaagcagcacctgctttggtagaaggtcctctagaaccgccaacatcaaat
atcatatcaactactacccatgtccaagaggatcccttgtctgcattcttcagtcaggca
gctgcaaatgctggtggcagctccggtgtagtagtcgcaggacagccaaatcaatctttt
agtgccactcctttgtctacacatgcaccaacaagtatcaccacatcacagtcgccagcc
ttgcatcatttgcttccttctcaaacttcatcagcttctgggatacccaccgatgttcat
ggtggcactggccctatagtgaggtccactaaccttgtaaatccatcacttttttcacca
ttgacgtcttcgcagacaacaatggtgcccggtaattatgtagtgccaactgctccacct
caacatcctcgtaccactcagcagccgcaaagtgctcccttgcttcaccccttcccatta
cctacagcttcaccttctccaccgtatgggacaccattacttcaaccgtttccaccacca
aatccatctccgtctcttgcatcagcaccagtctaccccccagtgttgtccagagacata
gtcagagatgcattactgagacttgttcagaatgacgaattcatcgatttagtctaccag
gagatcgtgaacaataattaa
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