Phragmites australis (common reed): 133890840
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Entry
133890840 CDS
T10575
Name
(RefSeq) uncharacterized protein LOC133890840
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
paua Phragmites australis (common reed)
Pathway
paua03013
Nucleocytoplasmic transport
paua03015
mRNA surveillance pathway
paua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133890840
09122 Translation
03013 Nucleocytoplasmic transport
133890840
03015 mRNA surveillance pathway
133890840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133890840
03041 Spliceosome [BR:
paua03041
]
133890840
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
133890840
Spliceosome [BR:
paua03041
]
Complex C
Other components
EJC/TREX
133890840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
133890840
NCBI-ProteinID:
XP_062187426
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Position
14:complement(27672127..27677280)
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AA seq
794 aa
AA seq
DB search
MSTYPVLNDQPIDQWKVTELKNELQKRNLPIKGLKDDLVKRLFEAIQGEIVDGGERTHGG
TPLAEELKGGETPGPVDASVYQASVEQNVDEDPSEVTKQGEYPVISVTEASNESLVATTE
VSQEAVVGTAEVSQRTLDAVAEVEAPPVDVALAATDENHCETNGVGIESASSGNTIVKEV
HPHSEGVVDTIEKTPEDTSKKMDIDDVPSDVTRINIKLGVDVDNKILEQEAVTTPGIITL
HADRRDSDVAAAEAEDDTSKKMAIDDVPSDFTSSNVKLAVNVDCKTEHDEVPTQPNAIAS
HANVVATSESAIPENNFSENTFIYGKDHEDPKHTNGDCKTILCGPNDQVPEVKPDLGSQI
KCVSISHDNISNLNADNSDLELESKQEMVKPSSTIPSVGDDLLALDDDKEMHKSGTSLQE
LGSTTNINLDRKEDSPDGSSPEKLNLDGSSGDESMDEDMMESNHSDSNMKSDDPRGKTKV
TSHHVLKELTLLDTVTEGFSAHTEEVVAEEKPPTPTEKRKLEDQEVAASYEQSKRQCQWN
ADTVNISDQQASTLTGTGTRKEVFRSALKRSFGRSDSTSGDSAKERIVPPPQKPATTSLR
IDRFVRPFTLKAVQELLGKTGSVCSFWMDHIKTHCYVTYSSVEEAVATRNAVYNLQWPPN
NCSYLVAEFVDSQEVKLKHELPRPSQVPISPVTATAPKTASPFQQSKANQTIPSHAAAAS
RGLLPTPRLAKPTPTSDPGPARERLPPPPKKPEPALTLDDLFKKTQAYPRIYYTPLSEEE
VSVKLAARDKGKRG
NT seq
2385 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacatatcctgtgctgaatgaccagccaattgatcagtggaaggtcactgagttg
aagaatgagctccagaagaggaatctgcctatcaaaggtttgaaggatgatcttgtgaag
aggctctttgaggccattcagggtgagatagttgatggtggggaacgaacacatggtgga
actcccctggctgaggagctgaaagggggtgaaactcctggtcctgttgatgcatctgtt
taccaggcttcagtggaacaaaatgtcgatgaagatccttctgaggttacaaaacagggt
gaatatcctgttatctctgttacagaagctagtaatgaaagtttagttgctactacagaa
gttagtcaggaggctgtcgttggtactgcggaagttagtcagagaactttggatgctgtt
gcagaagttgaggctcctccagtcgatgtggcactggcagcaactgatgaaaatcactgt
gaaactaatggagttggcatagaatcagcttcaagtggcaatactatagtgaaggaagta
catccacattctgaaggtgtcgttgatactattgagaagaccccagaagacaccagtaag
aaaatggatattgatgatgtaccgtctgatgttaccaggattaacatcaagttaggcgtt
gatgtggacaacaaaattctagaacaagaagcagtaaccacacctggtattatcacattg
catgctgatcgtagggattctgatgttgcagctgcagaggcagaagatgacactagcaaa
aaaatggctattgatgatgtaccgtctgactttaccagttctaatgtcaagttagctgtc
aatgtagattgcaaaaccgaacatgatgaagtacccacacagccaaatgccattgcatca
catgctaatgttgttgcgacttcagagagtgcgattcctgaaaacaatttcagtgagaat
acttttatatatggcaaggatcatgaagatccgaagcacactaatggggattgcaagacc
atcctatgtggaccaaatgaccaggtacctgaggtcaaacctgatctagggtctcaaatt
aagtgtgtgtcgatttctcatgataatatatcgaacctgaatgctgacaattccgactta
gaactagagtctaagcaggagatggtcaaaccatcatctaccattccctccgtaggtgat
gatttgctggcattggacgatgacaaagagatgcataagagcgggacctctttgcaagaa
ttaggatctacaactaatataaacttggacagaaaagaggatagccctgatggtagttct
cctgagaaactgaatttagacgggagttcaggtgatgaatcaatggatgaggatatgatg
gaaagcaatcattccgattccaatatgaaatctgatgatcccagaggaaagactaaggtt
acctcacaccatgtgttaaaagagctgaccctccttgataccgtcactgagggtttctct
gcacatactgaggaagttgtggctgaagagaagccaccaactccaactgaaaagaggaaa
cttgaagatcaagaagttgctgcaagttatgagcaaagcaaacgtcaatgccaatggaat
gcagacactgtcaatatttctgaccaacaagcatccacactaactggcactggtactcgg
aaggaagtctttcggtctgctctgaaacgttcttttggcaggtctgattcaacaagtgga
gattctgcaaaggagcggattgtaccacctcctcaaaaaccagcaacaacttccttaaga
attgatcgatttgtgcgcccatttactctgaaagctgtgcaagagcttcttggtaaaact
ggatctgtatgtagcttttggatggatcatatcaagacccactgctatgttacatactct
tcagtggaggaagctgtggccaccaggaatgctgtttacaacctccaatggcctccaaac
aactgcagttacttggttgctgaatttgttgattcacaagaggtgaagctcaaacatgaa
ctccctcgcccatctcaagtgcctatcagtcccgtcaccgctacagcaccaaagacagca
tcaccgttccaacaatccaaggctaaccaaaccataccttcccatgctgctgctgcttca
agggggctgttgcccactccacgtcttgccaagccaactcctacatctgaccctggacca
gcaagagagaggcttcctccccctccaaagaagccggaacctgccttgacacttgatgat
ctcttcaagaaaacacaagcctatccgaggatttactatactcccttgtccgaagaggag
gtatcagttaagcttgcagctcgtgacaaaggaaagagggggtag
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