Phragmites australis (common reed): 133890903
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Entry
133890903 CDS
T10575
Name
(RefSeq) uncharacterized protein LOC133890903 isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
paua Phragmites australis (common reed)
Pathway
paua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133890903
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paua03021
]
133890903
03041 Spliceosome [BR:
paua03041
]
133890903
03036 Chromosome and associated proteins [BR:
paua03036
]
133890903
Transcription machinery [BR:
paua03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
133890903
Spliceosome [BR:
paua03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
133890903
Complex B
133890903
Complex C
U2 SnRNP specific factors
133890903
Chromosome and associated proteins [BR:
paua03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
133890903
TFTC complex
133890903
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
Motif
Other DBs
NCBI-GeneID:
133890903
NCBI-ProteinID:
XP_062187509
LinkDB
All DBs
Position
14:complement(7440701..7453180)
Genome browser
AA seq
1355 aa
AA seq
DB search
MESSSTAGDASASAAASSSGPSASAAVAGATHYLAKRVLRGSAVLHVAEGHFRSPSSADV
VLGKETSLELVAVGDDGVLQSICEQDMFGIIKDIGVLQWHSRHISLIPQIEHKDLLVVLS
DSGKLSFLYFCSEMHRFFAIANVDLSKPGNLRHQLGRILTVDRESNFVAVSAYEDKFALI
RVSVCQSPHGSGIGTISDKKYFYPPENEEDARIASGASRTSIRGTIWSMCFISTSLDEEY
YSVLAMIIHRKGSDVNDLSLFGRDSSSCVINHISSYSETGPLAIDISEIPEMFGFALLFR
VGDALLLDLRNPRNVCCIRRITLTTSLIGEPVTIEDSCPGLDVDDDVAACALLELRDSGN
NIMKDDGYMDIDGFDNRCNVKSRVICSWSWEPPDHVRRGWARLLFCLDDGEFHILEFALD
VEGVKLSMFEYIDRALPCKPLLWMQNRMIIGFVEMGDGTIFKLGHHRLLHKSTIQNVAPI
LDVAITDYHGEKQDQMFACCGMCPEGSLRVLRNGVNVEKLLRTEAIYQGVTGLWTLRMKI
TDVYHSFLVLSFVEETRVLSVGLSFSDISDAVGFQPDVCTLACGLLADGFLVQIHSKGVK
LCLPTVCAHPDGAPLTSPVCTDWYPDVTISVGAVGHNTIVVATSNPCCIYVLGIRSSPSF
QHELYEVQHVQLRNEVSCISIPQEDWRHDNAASSYAEVDDFCSKPPAKLNVRKFAVIGTH
KPSVEIISLEPGEAFRLLTTGLISVNNALGAPISGCIPENVRFVAAERFYILAGLRNGML
LRFESEASEHYFPGSFYKDSSTPSVNTLLQLISIRRIGITPVVLAPLHDSADADIIVLSD
RPWLLHAARHSLAYSSIPFLPASHVTPVSSVDCPNGLLFVAESCLHLVEMVHGKRLNAQK
FSIGGTPRKVLYHSESRTLLVLRTGLIGASCSSDIVQVDPQNGVLLSRFKCEPGETAKCM
QIAKIGSDQVLIVGTSKSPGRPMMPNGEAESSIKGRLIVLSLDTVESPCESSSFIPTSSF
NTSLHTGSPFHEIVGYTTEEFSSNSLCSSPDEVCCNQIQAEQTAGHLRSLTHATLSGAVL
AVYSYLDRYVLAAAGNTLYVFGFANENPHRMKKCAVGRTRFTITCLKTFASRIAVGDCRD
GVLFYSYNESLRKLELIYSDPAQRLVGDIALLNCETAVVSDRRGSISVLSCARLEVSESP
QKNLAVNCSFYMGETAMSIQKAAFTYRLPVDDDTDPVLESSYNCIVASTLLGSVFVMIPL
TSEEHQLLQDVQERLSVHPLTAPVLGNDHTEFRRRGIPLGVPPILDGDMLVQFLELTGEQ
QQAILTHALLGKGPHRPVSVFQVLRTLERIHYALN
NT seq
4068 nt
NT seq
+upstream
nt +downstream
nt
atggagtcgtcctccaccgccggcgacgcctccgcgtcggctgcggcgtcctcttcgggc
ccctccgcgtccgccgccgtcgcgggtgccacccattacctcgccaagcgggtgctccgg
ggcagcgccgtgctccacgtcgccgaggggcacttccgatcgccctcctccgccgatgtc
gtcctcggcaaggaaacttcactagagttggttgcggttggtgacgatggtgttttacag
tcaatctgtgaacaagacatgtttgggattataaaagatattggtgtgctgcaatggcat
tctagacacattagtttgattccacagatagaacacaaagatcttctggttgtgctttca
gattctggaaagctttcctttctatacttttgctctgagatgcataggttcttcgcaatt
gccaatgttgacttatccaaaccaggaaatctgaggcatcagcttggaaggattttaact
gtagatcgagaatctaattttgttgctgtaagtgcgtatgaggataagttcgctcttata
cgtgtttcagtgtgccagagtcctcatggttctggaataggtaccatttctgataagaaa
tatttttatccaccagaaaatgaagaagatgcaagaatcgcaagtggtgcatctaggacc
agcatccgcggtacaatttggtccatgtgcttcatatcgacatccctagatgaagaatat
tattcagttctggcaatgataattcacaggaaaggctctgatgtgaatgacttgtcattg
tttggacgtgactccagcagctgtgttatcaaccacatctctagttattcagaaactgga
ccattggcaattgacatatcagaaattcctgaaatgtttggctttgcacttctgttccgt
gttggtgatgctttactgttggatcttagaaacccaaggaacgtctgttgtatccggaga
atcaccttgacgactagcctgattggagaaccagtcactattgaagattcctgtccagga
ttagacgttgatgacgatgtggctgcttgtgctttgctagaattgagagattctggtaat
aacataatgaaggatgatggttacatggacattgatggttttgacaacagatgcaatgta
aaatcaagggttatttgctcgtggagttgggagccgcctgaccatgtcaggcgaggatgg
gcaaggttgttattttgcttagatgatggagaatttcatattttggaatttgcattggat
gttgaaggagtgaagttgtccatgtttgagtatattgatagggctttgccttgcaaacct
cttttatggatgcaaaataggatgataataggatttgtcgagatgggagatggaacaata
tttaaacttggacatcatagattgcttcataaaagtacaattcagaatgtagcaccaata
ttggatgtagcaattactgactaccatggtgagaaacaggatcagatgtttgcatgttgt
ggaatgtgccctgagggatctctgcgagtgttacggaatggtgtcaatgtggagaagctt
ctgaggactgaagctatttatcaaggtgttactggtttgtggactttgagaatgaagata
actgacgtttaccactcttttcttgtgctatcatttgtggaggaaaccagagtactgtca
gtaggactaagttttagtgacatcagtgatgctgtgggattccagcctgatgtttgcaca
ttggcatgtggtttgttagctgatggttttcttgtgcaaattcacagtaaaggtgtaaaa
ctctgtttgcctacagtatgcgctcatcctgatggtgcccccttaacttctccagtttgc
acagactggtatcctgatgtcactatcagtgttggtgctgtaggacataatactattgtt
gttgctacatcaaatccttgttgcatatatgttcttggtatcagatcatcaccttctttt
cagcacgagttgtatgaggtacagcatgttcaattgcgaaatgaagtatcttgcatatcc
atcccgcaagaggactggagacatgacaatgcagcttccagttatgcagaggttgatgat
ttttgtagcaaacccccagctaaacttaatgtccgcaagtttgctgtcattggaactcat
aagccttctgtggaaattatctcgttggaaccaggagaagcatttaggctgctaactacg
gggcttatttcagtaaataatgcacttggtgctcctattagtggttgtatacctgaaaat
gtcaggtttgttgcggctgagaggttctacattcttgcaggcttgagaaatggaatgctt
ctcaggtttgagtcagaagcaagcgagcattatttccctggttccttctacaaggactct
tctaccccttctgttaatacactccttcagttgatttctatacggcgtattggaatcact
cctgtagtccttgcaccattgcatgattcagctgatgctgacatcattgttctcagtgat
aggccttggctattacatgctgctcgacatagcctggcatattcatcaattccatttctg
cctgcatctcatgtgacgccagtatcatctgttgattgccccaatggtctgctgtttgtt
gctgagagctgtttgcatttggttgaaatggttcacgggaaaagattgaacgcacaaaaa
ttttcaattggagggactccaaggaaagtgttataccacagtgaaagtagaacactgttg
gtactgagaactgggctaattggtgcatcatgttcttcggatattgtccaagtagatcca
caaaatggggtattgctttccagattcaaatgtgaacctggtgaaacagcaaaatgcatg
caaattgcaaaaataggaagtgatcaagttttaattgttgggactagtaaatctcctgga
cgaccaatgatgccaaatggcgaagcagaaagcagtatcaagggacgcctcattgtttta
agcttggataccgttgaaagtccttgtgagagcagttcatttatcccaacttctagtttc
aatacctctttacatactggctctccgttccatgaaattgttggatatacaactgaagaa
ttttctagtaacagcctgtgcagcagtcctgatgaagtttgctgcaaccaaattcaagct
gaacaaacggcaggacatttgagatcactgactcatgctacattgagtggtgcagttctt
gctgtctattcatatctagatcgctatgtgttggcagctgctggtaatacgctttatgta
tttggtttcgcaaatgaaaatcctcatcggatgaaaaagtgtgctgttggtagaacacga
tttacgataacttgtttgaagacatttgcatcacggattgcagttggcgattgtcgtgat
ggtgttctcttctattcttataatgagagtcttaggaagttggaactgatctattctgat
cctgctcaaagattggttggtgatattgctcttttaaattgtgaaactgctgtggtatca
gatcgacgtgggagcatatctgtattatcttgcgcaagattggaagtttcagaaagtcca
caaaagaacttagccgtaaattgttcattttatatgggtgaaactgctatgagcattcag
aaggctgcatttacgtatcggcttccagttgatgatgataccgatccggtgcttgagtcg
tcttacaactgtattgtggcaagtacgttgctcgggagtgtcttcgttatgattccgctc
acaagtgaggaacatcaactgttgcaagatgttcaagaaagactctctgtacacccattg
actgctccagtcttgggaaatgatcatacggaatttcgtcggcgtggcatcccgttggga
gtacctcccattctggatggcgatatgcttgtgcaattcttggagctcactggtgaacaa
cagcaagccattcttacacatgctttgctagggaaggggccacataggcctgtctcagtt
ttccaggttttgcgaacattagaacgcatccattatgcactcaactga
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integrated database retrieval system
