KEGG   Phragmites australis (common reed): 133891387
Entry
133891387         CDS       T10575                                 
Name
(RefSeq) THO complex subunit 4A-like
  KO
K12881  THO complex subunit 4
Organism
paua  Phragmites australis (common reed)
Pathway
paua03013  Nucleocytoplasmic transport
paua03015  mRNA surveillance pathway
paua03040  Spliceosome
Brite
Messenger RNA biogenesis [BR:paua03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     133891387
    TREX complex
     133891387
Spliceosome [BR:paua03041]
 Complex C
  Other components
   EJC/TREX
    133891387
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    133891387
SSDB
Motif
Pfam: RRM_1 FoP_duplication
Other DBs
NCBI-GeneID: 133891387
NCBI-ProteinID: XP_062188086
LinkDB
Position
14:complement(9366084..9370895)
AA seq 251 aa
MSSGLDMSLEDLIKRSKSRPKANPISSSGPARRAPLAARAAPYPPAAPKARATNNSPYGI
YAEHVASLAAVAPQPAAARTFETGTKLHISNLDAGVTVEDVQELFGEVGELKRYSMNYDK
DGRSKGTAEVVFARKVDALDAIKRYNGVLLDGKPMMIELIGNNAEPTPVVPLIHNRPLQD
YSEIHNSVPQRGGHRGTSQGNGHLGNSSQNSGGRRQGKARGQDRNRAQVSAADLDAELDK
YHAEAVKEVRL
NT seq 756 nt   +upstreamnt  +downstreamnt
atgtcgagcggcctcgacatgtccctggaggacctcatcaagcggtccaagtcccgaccc
aaagccaaccccatctcctcgtcgggacccgcccgccgcgcgccgctggccgcccgcgcc
gcgccctatccaccggctgcccccaaggcccgcgccaccaacaactcgccctacgggatc
tacgccgagcacgtcgcctccttggccgcggtcgcgccacagccggccgccgcgaggacg
ttcgagacggggacgaagctgcacatctccaacctcgacgccggcgtcactgtcgaggac
gtccaggaactcttcggggaggttggtgagctcaagcgttattcgatgaactatgacaag
gatgggagatccaagggaactgcggaagttgtctttgcaaggaaagtggatgctttggat
gctatcaagagatacaacggtgttctacttgatgggaagccaatgatgatagagctaatt
ggaaacaatgccgaaccaacccccgtggtgccattaatccacaaccgtcctctgcaggac
tacagtgaaattcataacagtgtgcctcaaagaggtggtcatagagggacatcccaaggc
aatggtcatcttggaaacagtagccaaaatagtggtggccgcagacaggggaaagcccga
gggcaggatcggaatcgtgcacaagtgtctgctgctgatcttgatgctgaactggacaag
tatcacgcggaagcagtgaaagaagtgaggctctga

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