Phragmites australis (common reed): 133891577
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Entry
133891577 CDS
T10575
Name
(RefSeq) uncharacterized protein LOC133891577
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
paua Phragmites australis (common reed)
Pathway
paua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133891577
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133891577
03041 Spliceosome [BR:
paua03041
]
133891577
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
133891577
Spliceosome [BR:
paua03041
]
Complex B
Other components
Prp19-related factors
133891577
Complex C
133891577
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
TPR_12
PPR
TPR_15
ARM_TT21
ARM_TT21_C
UTP6_C
HTH_psq
Motif
Other DBs
NCBI-GeneID:
133891577
NCBI-ProteinID:
XP_062188287
LinkDB
All DBs
Position
14:complement(28453074..28457632)
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AA seq
928 aa
AA seq
DB search
MPSAAGPVAVAVAAEKPAPAPMVGISPDLYPTEDDLPYEEEILREPFKLKGWWRYLVARA
AAPFAKRAVIYERALKALPGSYKLWHAYLRERLDHARPHPIDHPAYSSLNNTFERALATM
HKMPRVWNLYLTSLLDQRLLTRARRAFDRALRALPVTQHDRIWPLYLRLASLPACPVETS
LRVFRRYLQFDPSHAEDFINFLISANRWQEAADRLASVLNDDGFRSVKGKTRHQLWLELC
EILTKHADEVAGLKVDAILRGGIRKFTDEVGKLWTSLSDYYVRRGLFEKARDVFEEGVSS
VVTVKEFSVVFDAYTQFEQSMLAAKLEAAEEEEVEDEDEQGGRKNGMKKLSKEFLEGFWL
NAEDDTDLRLARFERLLDRRPELLSSVLLRQNPHNVEEWHRRVKLFEKDPARQVATYVEA
VKTVDPMKAVGKPHTLWVAFAKMYEKHNRLDSAEDIFKRATQVNYKAVDHLASIWCEWAE
MELRHSNFDKAIELMRQATAEPSVEVKRRAAAEGNEPVQIKVHKSLKLWSFYVDLEESLG
TLESTRAVYERILDLRIATPQIILNYAFLLEEHKYFEDAFKVYERGVKIFKYPHVKAIWV
TYLTKFVQRYRRSKIERARELFHEAVQQAPPDEKKAIYLQWAKFEEDYGLAKRAMNVYDE
AVRAVPNSEKMSMYEIYIARAAELFGVPRTRQIYEQAIESGLPDRDVMTMCMKFAELERS
LGEIDRSRAIYVHASNYADPNSHSDFWKKWNDFEIQHGNEDTFREMLRIKRTVAASRSQT
HFILPEYLMQRDQRLNLDEAVDTLKRAGVPEDEMAALERQLAPGPSLAPPSAPSTTTTPA
NRMMNFVSAGVEAQAEGSRQQAGNNEDIELPEESDDEEDVQIAEKSVPAAVFGELGKRAA
ENREESSGAGAQENEQLGALERIKRRRQ
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcggccgcaggtccggtggccgtagccgtggcggctgagaagcccgctcctgcc
ccgatggtcgggatatcgccggatctgtacccgacggaggacgacctcccgtacgaggag
gagatcctgcgggagccgttcaagctcaaggggtggtggcgctacctcgtcgcccgcgcc
gccgcgccgttcgctaagcgcgccgtcatctacgagcgtgcgctcaaggcgctcccgggg
agctacaagctctggcacgcctacctccgcgagcgcctcgaccacgcgcgccctcacccc
atcgaccacccggcctactcgtcgctcaacaacaccttcgaacgggcgctcgccaccatg
cacaagatgccacgcgtctggaacctctacctcacgtcgctcctcgaccagcgcctgctc
acgcgcgcgcgccgcgccttcgaccgcgccctgcgcgcgctgccggtgacacagcacgac
cgaatctggccgctgtacctgcgcctcgcgtcgctcccggcctgccccgtcgagacgtcg
ctccgcgtgttccgccgctacctccagttcgacccctcccacgcagaggacttcatcaac
ttccttatatccgccaaccgctggcaggaggccgccgaccgccttgcttccgtgctcaac
gatgacggcttccgctctgtcaaggggaagaccaggcaccagctctggcttgagctctgt
gagatcctcaccaagcacgccgatgaagtcgccgggctcaaggtggacgccatactgcgg
ggtgggatacgaaagttcaccgacgaggttggcaagctgtggacctcgctgtccgattac
tatgtaaggagggggcttttcgaaaaagcaagggatgtatttgaggagggggtttcttcg
gtggtcacggtgaaggagttcagcgtggtgtttgatgcatatacgcaatttgagcagagt
atgcttgcagcaaagctggaagctgccgaggaagaggaggttgaggacgaggatgagcaa
gggggaaggaagaatgggatgaaaaagttatcgaaggaattccttgagggattctggttg
aacgctgaggatgatactgatttgaggctggcaaggttcgagcggctattggatcgcaga
ccagagctccttagcagtgtgctgttgcgacagaatccacataatgttgaggagtggcac
aggagggtgaaactttttgagaaggatcctgcaaggcaagtagcgacatatgttgaggct
gtgaaaactgtggacccaatgaaggcggttggtaaacctcatactctatgggtggcgttt
gcaaagatgtatgaaaaacataatcgtctagatagtgctgaggatatttttaaacgggct
acgcaagtgaactataaggcagttgaccacttagccagtatctggtgtgagtgggcagag
atggagttgaggcacagcaattttgacaaggccattgagctgatgaggcaagcaacagca
gagccctctgtcgaggttaagaggcgagctgctgctgaggggaacgaacctgtccaaata
aaagtacataaatctttgaaattatggagcttttatgtggatctggaggagagccttgga
accttggaatctacccgtgctgtttatgagagaatattggatttacgaattgccactcca
caaataattctcaattatgcatttcttcttgaggagcacaaatattttgaagatgcattt
aaagtgtatgaaagaggcgtgaagatattcaagtatccccatgttaaggccatttgggtg
acctacctcacaaagtttgtacagaggtacaggagaagcaagatagaacgagcaagagag
ctgttccatgaagctgtccaacaggctcctccagatgaaaaaaaggccatatatttgcaa
tgggctaaatttgaggaagactatggtcttgcaaaacgtgctatgaatgtatatgatgaa
gctgtaagggctgttcctaacagtgaaaagatgagcatgtatgaaatctacatagcacgt
gccgctgagctatttggtgttccaaggacaagacaaatatacgagcaagcgattgaatct
ggcctcccagacagagatgttatgacaatgtgcatgaaatttgcggaactagaaagaagc
cttggagaaattgaccgttctcgtgccatttatgtgcacgcatccaactatgctgatcca
aactcccattccgacttttggaagaagtggaatgattttgagatccagcatggtaatgaa
gacacattcagggaaatgcttcgcatcaaacgtacagtggctgccagccgcagtcagacg
catttcatactcccagagtacttgatgcagagggaccagaggctaaacctggacgaggca
gttgacactctgaagcgtgctggtgtccccgaggatgagatggcagccctagaaaggcaa
ctagctcctggaccatccttggcaccgccgtctgctccaagcaccactacaacacccgca
aacaggatgatgaactttgtcagcgctggggtagaggcacaggctgagggcagcaggcaa
caggctggtaacaacgaggacatcgagctgcctgaggagagtgacgatgaggaggatgtc
caaattgcagagaagagtgttcctgctgcagtgtttggtgagcttggcaagagagctgca
gagaacagggaggaaagctcaggtgcaggtgcccaagagaatgagcagctgggcgccctt
gagaggataaagagacgacgccaatag
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