Phragmites australis (common reed): 133891999
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Entry
133891999 CDS
T10575
Name
(RefSeq) regulator of nonsense transcripts 1 homolog isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
paua Phragmites australis (common reed)
Pathway
paua03013
Nucleocytoplasmic transport
paua03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
133891999
03015 mRNA surveillance pathway
133891999
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133891999
Enzymes [BR:
paua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
133891999
5.6.2.5 RNA 5'-3' helicase
133891999
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
133891999
mRNA cycle factors
Common to processing body (P body) and stress granule
133891999
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
nSTAND3
Helicase_RecD
NPHP3_N
ATPase
SRP54
PhoH
AAA_16
AAA_22
AAA_32
Ribosomal_S13_N
AAA_25
AAA
Motif
Other DBs
NCBI-GeneID:
133891999
NCBI-ProteinID:
XP_062188719
LinkDB
All DBs
Position
15:complement(10926993..10936920)
Genome browser
AA seq
1268 aa
AA seq
DB search
MATQPPSSAAAAANLYETASQPDPAAGDAYTFLEFNTQGDDFDYPDFPELSQPPARSAPL
PPVPASSSSPWPAPPPPPPDASSPDSDLAPQDNPTPPASSSSPSPRSASKVRSSAADGLA
AGVAALSFEEPVGAGAGEDGYDYGKGDFVEHACRYCGIHNPACVARCNVPSCRKWFCNSR
GNTSGSHIVNHLVRAKHKEVYLHKDSPLNETILECYNCGCRNVFLLGFISAKSENVVVLL
CREPCLSVNALKDMNWDLSQWCPLIDDRCFLPWLVKVPSEQEQLRARQISAQQINKVEEL
WKTNPDASLEDLEKPGVDDEPQSVVLKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDN
VTVRWDIGLNKKRIAYFVFPKEDNELRLVPGDELRLRYPGDSSHPTWQSVGHVIKLTAQE
EVALELRASQGVPIELNVGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHE
VEHQVIRNTLPRRFGAPGLPELNASQVLAVKSVLQKPVSLIQGPPGTGKTVTSAAIVYHM
AKQGQGQVLVCAPSNVAVDQLAEKISSTGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLD
TSEKSELYKLQQLKDEQGELSSSDEKKYKALKRATEREILQSADVICCTCVGAGDPRLSN
FRFRQVLIDESTQSTEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFER
LVILGVKPFRLQVQYRMHPCLSEFPSNCFYEGTLQNGVTVNERQSSGIDFPWPVPNRPMF
FYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYM
SRNGSLRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRAR
YGIVVLGNPKVLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFL
GGGQGVMHGASSGAVGSSPAADKRSGRGKGQSFVPFGPPNGVHKPGVHPAGYPVPRMPFP
PFPGSPHSQPYAIPTRGSLHGPIGAVPSVPQPGNRNFGAPRSNTGGPIGGHLAHQQNSQQ
AMGGIGSTFYFTGLENPSSQPSGGGPMSQTGLMTQMPVQGLSQTFRDGFSIGGMSQDFFG
DDFKSQGSHVPYNIADFSTQASQGGYGVEFTQGPQTGYSGNYLNQNAHPGYSHMGTTNDI
VSQDHMAHGSHGIFTQAGYNDPSQDESSQMHYGMAAPGPLQSQSMMNPLYSQSYAHYNTQ
PQSLPPPQ
NT seq
3807 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgcagccgccctcctccgccgcggcagcggccaacctctacgagacggcctcg
cagccggaccccgccgccggcgacgcctacaccttcctcgagttcaacacgcagggcgac
gacttcgactaccccgacttcccggagctctcccagccccccgcccgatccgccccgctg
ccgcccgtccccgcctcatcctcctcgccctggccggccccgcccccgccgccgcccgac
gcgtcctccccggactccgatctcgcgccgcaggacaaccccacgccgccggcctcatcc
tcctcgccgtcgccgcggtccgcctccaaggtgcggtcgtcggccgcggacggcctcgcc
gccggggtagcggcgctcagcttcgaggagcccgtaggcgccggcgccggggaggacggg
tacgactacggcaagggtgacttcgtcgagcacgcctgccggtactgcgggatccacaac
cccgcgtgcgtggcgaggtgcaacgtgccctcctgccgcaagtggttctgcaactcgcgg
gggaacacctccggctcccacattgttaaccacctggttagggcaaagcataaggaagtt
taccttcacaaggatagccctttgaatgaaacaattcttgaatgctataactgtggttgt
cggaatgtatttcttcttggatttatctcggcaaagtcggagaatgttgttgttcttctg
tgcagagagccttgtttgagtgttaatgcattgaaggatatgaactgggatctcagtcag
tggtgtcctcttattgatgacaggtgtttcttgccatggcttgtaaaagttccctcagaa
caggagcagctgagagctcgtcaaattagtgctcaacaaattaacaaagtggaagagctc
tggaagacaaatcctgatgcctctcttgaagatcttgaaaagcctggcgtagatgatgaa
cctcagtcagtggttttgaagtatgaagatgcttaccagtatcaaaatgtttttgctcca
ctgataaagcttgaggctgattatgacaagatgatgaaagagtcacagagcaaggataat
gtaactgtgcggtgggatattggactgaacaagaagcgcatagcctattttgtctttcca
aaggaagataatgaattgaggcttgtacctggagatgagctacgcttgagatatcctggt
gatagttcgcatcccacatggcagtctgtgggacatgtgattaagctcactgcacaagag
gaggtggcacttgagcttcgtgctagtcagggggtacccattgaattaaacgttggattc
agtgtggactttgtttggaagagtaccagctttgataggatgcaaggagcgatgaaaacg
ttcgctgtagatgagacaagtgtcagtgggtacatataccaccaccttctgggacatgaa
gtcgagcatcaagtaatacgtaatactctaccgagacgctttggtgcacctggacttcca
gagcttaatgcttcccaggttttagcagttaaaagtgttctccagaagccagttagtttg
attcaaggtccacctggtactggaaaaactgtcacatctgctgcaattgtgtatcacatg
gctaaacaagggcaaggacaggtccttgtatgcgcacctagtaatgttgctgttgatcag
ctggcggagaagataagctcaactggcctcaaggttgttaggctgtgtgcaaaatctaga
gaagctgtttcatctcctgtggagcatctgacacttcattatcaggttcgacaccttgat
acatcagaaaagagcgaattgtataagctacagcaactgaaagacgaacaaggtgagttg
tcaagcagtgatgagaaaaagtacaaggcactaaaacgtgccactgaaagagagatacta
caaagtgctgatgtcatttgctgcacctgtgttggtgctggagatcctcgtctgtcaaac
ttccgtttccgtcaagttcttattgatgagtccacgcagtcaacagaacctgaatgcctt
attccattggtgcttggtgtcaagcaggttgttcttgtcggagatcactgccaacttggt
ccagtcatcatgtgcaaaaaagcggctcgtgcgggattagcacaatctttatttgaacgt
cttgttatccttggagtcaagcctttcaggctacaggtccaatatagaatgcatccttgc
ctttcagaatttccgtccaattgcttctatgaaggcaccctgcaaaatggagtaactgta
aatgagaggcaatcttctggaattgattttccttggcctgttcccaatcggcctatgttc
ttctatgtgcagatgggtcaagaagagatcagtgctagtgggacatcttacctgaataga
actgaagctgcaaatgttgaaaaaattgtaacaacgtttttaagaagtggtgtcgtacca
agccagattggagttatcacaccttatgaaggacaaagggcatatattgtgaattacatg
tcaaggaatggctctcttcgccaacaactttacaaggaaatagaggtagcaagtgtagac
tcctttcagggaagagagaaagactacattattctgtcttgtgttagaagcaatgagcac
cagggtattgggtttcttaatgatccacggaggttaaatgttgcattaactcgtgcacgg
tatggcatagttgttcttggtaatcctaaagttttaagcaagcagccgctttggaatagt
ttgttgacgcattacaaggagcatgagtgcttggtagaaggacctttgaacaacttaaag
cagagtatggtgcaatttcagaagccgaaaaagatctacaatgatcgaagactgttcctg
ggtggtggtcaaggtgttatgcatggagctagttctggggctgtgggctcaagcccggcg
gcagataagagaagtggtaggggaaaaggacaatcatttgttccttttggccctccaaac
ggggtccataaacctggtgtgcatccagcaggctatcctgtacctcggatgccttttcct
ccatttcctgggtctccgcattctcaaccatatgcaattccaacccggggatcattgcac
gggcccattggtgctgttccatcggtgcctcaacctgggaatagaaactttggtgcccca
cgttcaaatactggcggtcctattggtggccaccttgctcatcaacagaattctcagcaa
gctatgggtggcatagggtcaactttttactttactggcttggagaatccaagcagtcag
ccttctggtggaggtccaatgtcccaaactggattaatgacacagatgcctgtccaaggt
ctcagtcaaacattccgtgatggtttttccattggtgggatgtctcaggacttcttcgga
gatgatttcaagagccaaggatctcatgtgccatacaacattgcagatttttctacccag
gcttctcaaggtggttatggtgttgaatttactcaaggaccgcaaactggatactccggg
aattatttgaaccaaaatgcacatccaggatactcccatatgggtacaacaaatgacatt
gtatctcaggatcacatggcccacggatcacatgggatatttacacaagcaggatacaat
gatccctcacaagatgagtcatctcaaatgcattacggaatggcagctcctggccctctt
cagtcacagagcatgatgaaccccctctactctcaatcctatgctcactataacacccaa
ccgcagtctttacctcctccgcagtga
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