Phragmites australis (common reed): 133892007
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Entry
133892007 CDS
T10575
Name
(RefSeq) SNF2 domain-containing protein CLASSY 1-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
paua Phragmites australis (common reed)
Pathway
paua03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
133892007
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paua03400
]
133892007
DNA repair and recombination proteins [BR:
paua03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
133892007
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SAWADEE
ResIII
Motif
Other DBs
NCBI-GeneID:
133892007
NCBI-ProteinID:
XP_062188727
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Position
15:complement(274848..280671)
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AA seq
1233 aa
AA seq
DB search
MLKGSTGHLSHPIGAIPFEAFHNGSWHGVNSVRIRNGGLFVNFVHSGSTVEHNVGGDYLR
LHSRRATCFDCSHVLKPGSDVCVWQATSRGETQSSVLLCHDARLIKIKRNHHTDRCLCLF
AVIFYKDQCPGSKEKVITDRITEVATIGHVFILQKLQSEELQDGSVQWNSSEDCFHHNRS
KLLSARFSAEVTYLIVLSSLRGMEFNIKVVEGKIIYQIIKGDRARYSVDSMSIPPGFGKN
MEIISFQPRDEALRPRIRTVPIIRVKKHNLTEDGCITVKGELDSAQDVEILHEHVDLRRS
KRLKTQPDRFTSYDAPNFNRTYKKKEENASSTKNDSSQRAMSWDSLMQGESSDEDVLGNA
KGKQTVFRSFTVNEYPSPMEGQQKNPTKTTQCSLPKKEKPNFVEIENSTTEQGCPDSHIP
HTPAKNKEKCNHPASSFRPKSFTSSRSIDANSEPAFCQKRGRKRKKHMREREYKQMIDQC
IGNIQSEMEKDSDFELDVQMLNCSGHAYREEDFTWPSAHSQEEKDELEELWKEMDYSLAT
LALLEQKQIPDSEAVHERNTDLGRRVDEHCHHDCILDEQLGLTCRLCNVVCIEAKHIFPP
MFTGKDYERPERSNFCQDDHVLHSSFLEICAPEFSEFMGSGNVWTSITDLEPKLLAHQRK
AFEFIWKNLAGSLQLEEMDNSTACRGGCVVAHTPGAGKTLLLISFLVSYLKVHPRSRPLV
LTPKAAIHTWRREFEKWGISLPLHVLHHSNGRGNPMGTLSSKTQAVLKNFQRPSWKMMRI
MDCLDKLCKWHEHPSILLMTYSSFLALTKEDSKLLHRAFMAKILMNNPGLLILDEGHNPR
STKSKLRKLLLKVKTEFRILLSGTVFQNNFEEYFNTLSLARPRFVNDVMTALVPESEKGT
RSRTGKHQEALARHIFVERVGQRIESSSKHDRIDGISLLNKLTRGFIDSFEGTKLNNLPG
ICVYTLFMKPTDIQKEVLAKLTTPLSGNVRYPLEVELLTTIASIHPWLIKTTKCASTYFS
PAEVARVDKYKTNFTVGCKAKFVIDLLHKSSFRGERVLIFCHNVSPINFLVKLIEITFGW
RLGEEVLVLQGDQELPVRSDVMDKFNGDRKGNRKVLIASTTACAEGISLTGASRLVMLDS
EWNHSKTRQAIARAFRPGQERMVYVYLLVASGTWEEDKYNSNRRKAWIAKMVFFGSYVDD
PSQNRVTAIDDEVLKELADEDKTKTFHMIVKQD
NT seq
3702 nt
NT seq
+upstream
nt +downstream
nt
atgctcaagggatccacaggccaccttagccatcccattggtgcaattccatttgaggca
tttcataacgggtcatggcatggagttaattctgtaaggataaggaatggtggtctattt
gttaattttgtccactctggatccacggtcgagcataatgttggtggggactatctgcgc
ttacattcgagaagggcaacttgctttgattgctcacatgttctcaaaccaggttctgat
gtctgtgtatggcaagcaacttccagaggagaaacacaatcttctgtactattatgtcat
gatgcaaggctcatcaaaatcaagagaaatcatcacacagatcggtgtctctgcttgttt
gctgttattttctacaaagatcagtgtccaggcagtaaagaaaaagtgataaccgataga
ataaccgaggtagcgacaataggccatgttttcatcttgcaaaagctccaatctgaggag
ctccaagatggaagcgtgcaatggaattcttcagaggattgcttccatcacaatagaagc
aagctgttaagtgctagattctccgcagaagttacatacctgatagttttgtctagcctg
aggggaatggaattcaacatcaaggtggtagaaggaaagatcatttatcaaatcatcaaa
ggagaccgagcacggtatagtgttgattccatgagcataccaccaggttttggcaagaac
atggagataatatcattccaaccacgtgatgaggctttacgcccaaggatcagaacagtt
cccatcattcgtgttaagaaacacaatctcacagaagatgggtgtatcactgtgaagggt
gaattggatagtgcacaagatgttgaaatcttgcatgagcatgtcgacttgagacgctca
aagcgtctgaaaactcaaccggaccgctttactagttacgatgcacctaatttcaatcga
acctacaagaagaaagaggaaaatgcatcatccaccaagaatgacagttcacagagagct
atgagttgggattcactgatgcagggagaatcaagcgatgaagatgtgctaggaaatgcc
aaagggaagcaaacagttttcaggtctttcacggtcaacgaatacccaagccccatggaa
ggccagcagaagaacccaacgaaaacaactcaatgctctttgcctaagaaggaaaaacca
aactttgtggaaattgagaacagcacgacagagcaaggatgtccagattctcacattcca
catacacctgcgaagaataaagagaagtgcaatcatccggcttcatcattccgaccgaag
tcatttacttcatctcgcagcatagatgccaatagtgaaccagcattctgccaaaagagg
ggtaggaaaagaaagaaacacatgcgcgaaagagagtacaagcaaatgatagaccaatgc
attggaaatatccagagtgaaatggagaaagattctgactttgagttagatgtccagatg
ctgaattgcagtggacatgcttaccgagaagaagattttacatggccgtccgctcatagt
caagaggagaaggatgagcttgaagaactgtggaaagaaatggattattcattggctaca
ctagcacttcttgagcaaaagcagataccagattcagaagctgttcatgagagaaatact
gatttaggaagaagagtagatgaacactgtcatcatgactgcatactggatgagcaactt
ggtctaacctgcagattgtgtaatgttgtatgcattgaggcaaagcatatctttccacca
atgttcactggtaaggactacgagaggcctgaacggagcaatttttgtcaggatgatcat
gtccttcactcttcttttcttgaaatctgtgcaccagagttctcagaattcatgggatcc
ggaaatgtgtggacttcaatcactgatcttgaaccaaagctacttgctcaccaaaggaaa
gcgtttgaatttatatggaaaaacttggcaggatcattacagcttgaggaaatggataat
tctacagcttgtagaggtggctgtgtggttgcgcatactcctggggctggaaaaacactg
ctgctgatttcatttcttgtcagttacttgaaagttcacccaagaagccgaccattggtc
cttactccaaaagctgcaatccatacatggaggagagagtttgagaaatggggcatttca
cttcctttacatgtgctccatcactctaatggaagaggcaacccaatggggactcttagt
tcgaaaacgcaagcggttttgaagaactttcagcgaccatcctggaaaatgatgcggatt
atggattgcctggacaaattatgcaagtggcatgagcacccaagcattctcctcatgaca
tactcgtctttcctagcgcttactaaagaagactcaaaactgctgcatcgggccttcatg
gcgaaaattttgatgaacaaccctgggctattgattcttgatgaggggcacaacccaaga
agcaccaaatcaaagttgagaaagctactgttgaaggtgaagactgaatttagaatactg
ctgtccggtacagtctttcagaacaactttgaagagtatttcaacaccttatctttggcc
agacctcgttttgtcaatgatgttatgaccgcgctagttccagaatcggaaaagggaaca
cgtagcaggacgggtaaacaccaagaagcattggcgaggcatatttttgtggaaagagtg
ggccaaaggattgagtcgagcagcaaacatgacagaatcgatggcatctctttattaaac
aagcttacccgtggattcatcgattcatttgaagggacaaagctgaacaatcttccaggg
atatgtgtgtatacccttttcatgaaacccactgacatccagaaagaggtactggcaaaa
ctaacaacgcccttgtcaggcaatgtccgataccctctggaggttgaactgcttaccaca
attgcttctatccatccttggcttataaaaacaaccaagtgtgctagcacttactttagt
ccagcagaagtagctagagtggataagtacaagacaaacttcactgttggttgcaaggca
aagtttgtgattgatcttctgcacaagtcctcattcagaggggagagggtgctgatattt
tgccacaatgtgtccccgataaactttctcgtcaagctgatagagattacctttggatgg
cgtcttggggaggaagtcctagtgctgcaaggtgatcaagagctgcctgtgcgctcggat
gtcatggataaattcaacggtgacagaaaaggaaataggaaggtgcttattgcttcaacc
acagcctgtgccgagggtatcagtttgaccggtgcatcaagattggtcatgctcgattca
gagtggaaccattcgaagacaaggcaggcgattgcaagggcattccggcctggccaggag
agaatggtgtatgtgtaccttcttgtggcatctgggacatgggaggaagataaatataac
agcaacaggaggaaagcttggattgcaaaaatggtcttctttgggagttacgttgacgat
ccatcgcaaaaccgtgtgactgcaattgatgacgaagttctgaaggagcttgctgatgaa
gataagaccaaaactttccatatgatagttaagcaggactga
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integrated database retrieval system
