Phragmites australis (common reed): 133892259
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Entry
133892259 CDS
T10575
Name
(RefSeq) tRNase Z TRZ3, mitochondrial-like
KO
K00784
ribonuclease Z [EC:
3.1.26.11
]
Organism
paua Phragmites australis (common reed)
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
paua03016
]
133892259
Enzymes [BR:
paua01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.11 tRNase Z
133892259
Transfer RNA biogenesis [BR:
paua03016
]
Eukaryotic type
3'processing and CCA adding factors
3'processing factors
133892259
Prokaryotic type
133892259
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_4
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B
Motif
Other DBs
NCBI-GeneID:
133892259
NCBI-ProteinID:
XP_062188934
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All DBs
Position
2:complement(573388..591628)
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AA seq
1539 aa
AA seq
DB search
MPQVPAAPLRLLLLLPLSQTLAPAPLLHLSRRFFSSPASFGRAASLRAQPSRRGSSTLRK
APKEEMVGGDKEAPFNRKRAEGMDGGKRGSMELKTRRLNPVNTTCYVQILGTGMDTQDTS
PSILLFFDKQRFIFNAGEGLQRFCTEHKIKLSKIDHIFLTRVCSETAGGLPGLVLTLAGI
GDEGMSVNIWGPSDLDFLAGAMRSFIPNRAMLHTHSFGAGRNVSSSQSKDSVVILEDEVV
RISAMFVKPSYCNGAGSLKDIDLKPNDTAIVYACELPEIKGKFDPAKAAALGLKPGPKYR
ELQLGNSVQSDQFDEMVHPSDVLGPSIPGPTVLLVDCPTEYHMPELFSLQALSYFYEDSS
DQTESGKKVNCIIHLGPSSVTKAVDYQNWMKKFGATQHIMAGHEIKNMEIPILKGSARIS
SRLNFVCPQLFPSSGFWPVELANDVMEKNKITSLEACESVSAQNLLKFHLRPYAQLGLDR
ASIPSLFTLEDIVEELISEIPEVREVPEQVRKFWQNNADDKNTLPPAGNGMLMVEEPWIS
QNSGKVDDDTPLQEIVWRKHLKDNQEIPCCVENATREDMEITFLGTGSSQPSKYRNVSSI
YINLFARGGILLDCGEGTLGQLKRRFGVHGADEAVKSLRCIWISHIHADHHTGLARVLAL
RSKLLKGMPHKPMLVIGPRPLERFLNAYSTLEDLDMQFLDCRHTLKPSVEAILGENVSES
ATPQLENTMFAPGSKMENYNRKPASPRDTTALANFKELLHESGLEILYSVPVVHCPQAFG
VVLRAMEKVNIAGKVIPGWKVVYSGDTRPCAALIDASRDATVLIHEATFEDSMKDEAIAR
NHSTTKEAIEVGTSAGAYRTILTHFSQRYPKIPVIDEVDMEKTCIAFDLMSVNLADLPVL
PKVLPHLKVLFKDELVVDEFDEALRLIKYAVGKSGTDFKREMQRHSAAMRQLVHYKGHPD
PLRGDALNKAVRETANEAIAAVFSTEDPKPAVATESLGKRIQGFGNTNYEPSRDAQKSFL
SELSEVVGIGSASIKQGLSNFAAAHAMMTNDNGGTYKGPNLRRSLTTESDRYGQYDPSEI
QSESRASSDASKNVASGSWGPTPSSSAPTDDTSSSQRGVKTREERLLETIVTASGVRLQP
TRDALQIFLTEASKLDAVALSRALENKLNSPLWQVRMKAICVLEAIVRKQDTDPYSIVAS
YFIENTASVVKCCELPQVSLREKASKVLNLLVGEQPTGTTNLPATKTAMSPPVQMPDLID
TGDQDDLATQSSGQESHGQNIGKSAYVNSVDDLLGGEPIADISTTTDANGSDPFADVSFH
ESEIKETNDLFSGLTVEEKSSAAMHGISSPNKNELPDILGSNPDPFIQESVTDKGTVIDL
MPGLNLNGAGQAQPAVNAEPNSNLSGSQFFDTNNQTSHVASAAALNGILGQNSFYQQTPS
QYSVPQHMLFNQSFPGQQLNYDAMRILLAQQQQLLLQNFGNFNAGLGHSSFNSMNSENAS
VLPDIFNSSNQPQNHVAVMSNSKKDDTKAFDFVSVCISI
NT seq
4620 nt
NT seq
+upstream
nt +downstream
nt
atgccgcaggtgcccgccgcccctctccgcctcctcctcctcctccccctgtcccaaacc
ctagcccccgcccctctcctccacctctcgcgccgcttcttctcctcccccgcctccttc
gggcgcgccgccagcctccgcgcccagcccagccgccgcgggagcagcacgctcaggaag
gcgcccaaggaggagatggtcggcggggacaaggaggcaccgttcaacaggaagcgggcc
gaagggatggatggcgggaagcgcgggagcatggagctcaagacccgcaggctcaacccc
gtcaacaccacctgctacgtgcagatactcggtacaggaatggacacacaggacacttca
ccttccattttactcttcttcgacaaacaaaggtttatatttaacgccggcgagggtctt
caacgtttctgtaccgaacacaagataaagttatcaaagattgaccatatctttttaact
cgtgtgtgctcagaaaccgcagggggccttccaggcctggtgctaactctagcaggcata
ggagatgagggcatgtcggtgaacatatggggcccttctgaccttgattttttagctggg
gcaatgagatcttttatcccaaatagagcgatgcttcacacgcatagctttggtgctgga
cggaatgtatcttcttcacaatctaaagactctgttgttattcttgaggatgaagtagtc
cgaatatcagcaatgtttgtcaaaccaagttattgcaatggagctggtagcttgaaggat
attgacttgaagcctaatgatactgctatagtctatgcttgtgaattgccagaaattaag
ggaaagtttgaccctgctaaggctgctgcccttggtcttaagcctgggccgaagtatcgt
gaacttcaacttgggaactctgtgcagtctgatcaattcgatgaaatggttcatccaagt
gatgttcttggcccgtcaattcctggaccaactgttcttctggtggattgccccacagag
tatcatatgccagaactattttcactgcaagctcttagctacttttatgaagattcttcc
gaccaaacagaaagtggcaagaaagtaaattgcataatccacttaggtccatcctctgtg
actaaagctgttgactatcagaattggatgaaaaagtttggtgcaacacagcatatcatg
gcaggacatgaaattaaaaacatggaaattcctatcttgaaaggtagtgcaaggatatca
tcacgtctcaattttgtatgccctcagctcttcccatcctctgggttttggcccgtagaa
cttgcaaatgatgtcatggagaaaaataagattacttcgttggaagcctgtgaaagtgtg
tctgcgcagaatctgctgaagtttcatctgcgcccatatgctcaattggggttggataga
gcttctataccaagcttgttcacacttgaagatattgtagaagagcttatatctgagatc
ccagaggttagagaggttcctgaacaggttcgcaaattctggcaaaataatgcggatgat
aaaaatacactaccaccagctggcaacggtatgctgatggttgaagaaccatggatcagt
caaaattcaggtaaggtagatgatgacactcctttgcaagaaattgtctggagaaagcat
ctgaaggacaatcaagagatcccttgctgtgtggagaatgcaacgagggaagatatggag
attacttttttgggtacaggttcatcgcagccttcaaaatatcggaatgtaagttccata
tatattaacctgtttgcacggggaggtatacttcttgactgcggtgaaggaactttagga
caactgaaaaggaggtttggtgtacatggtgccgatgaagctgtaaaaagtttgaggtgc
atttggatttcccatattcacgctgatcaccacacagggttagctagagttcttgcttta
aggtctaaattgttaaaggggatgccccacaagcctatgcttgtgattggaccaagacca
cttgagagatttctaaatgcatattcaacacttgaagatcttgatatgcagttcctagac
tgcaggcatactttgaagcctagtgttgaagctattctcggtgaaaatgtttctgaatca
gccacacctcaactcgagaacaccatgtttgcccctggaagtaaaatggagaactacaac
aggaagcctgcaagtccaagggatactacagctcttgctaatttcaaagaacttctacac
gaatcaggtttggagattctgtacagtgtccccgtagtacattgtccacaggcatttgga
gttgttttgagagccatggagaaggtgaacattgctggaaaggttattccaggctggaag
gttgtatactcgggtgacacacgaccctgtgcagctcttatagatgcatccagagatgcc
acagtactaatacatgaggcaacattcgaggacagtatgaaggacgaagcgattgcaagg
aaccatagtacaaccaaggaggctatagaagtaggcacatcggctggagcataccggaca
attttgacccacttcagccagagatacccaaaaatcccagttattgatgaggttgatatg
gaaaagacgtgcattgcctttgacctgatgagtgtaaacctggcagatttgccggttttg
cccaaggttctaccacacctgaaggtcctgttcaaggatgagttggtagtggatgaattt
gatgaggctttacggttgatcaaatacgcagttggaaaatctggtactgatttcaagagg
gagatgcagaggcactcagcggctatgcgccaactagttcactataaaggccaccctgat
cccttaagaggggatgcccttaataaggctgtccgtgaaactgcaaatgaggctatagct
gcagttttctccacagaggaccctaaacctgctgttgcaacagaaagtcttggcaagcgc
atacagggctttgggaacactaattatgagccatcaagagatgcccagaagtctttcctt
agtgaacttagtgaggtagtgggtattgggagtgcttccattaagcagggtttgagcaac
tttgccgcagcacatgcaatgatgacaaatgacaatggtgggacatacaagggccctaac
ctccgtaggtctttgaccacagaatctgatagatatggtcagtatgatccaagtgaaatt
caaagtgagagccgtgcctcatctgatgcttcaaagaatgtggcttctggttcttgggga
ccaacaccatctagttctgcaccgactgatgatactagctcgagtcaacgtggggttaag
actcgtgaagagagacttttggagacaattgttactgcaagtggtgtgcggctgcaacca
actcgagatgctctgcagatatttttaacagaagcgtccaaattggatgcagtcgctttg
agccgtgcgcttgaaaacaaattgaattcgccattatggcaggttcgcatgaaggccatt
tgtgtgttggaagccattgtaaggaaacaggatactgatccttattctatcgttgcttca
tatttcattgagaacacagcttctgttgttaaatgctgtgagctgccacaggtttctcta
agagaaaaggcctcaaaggtcttgaatctgctggttggggaacaacctaccggaaccaca
aatcttccagcaacaaaaactgcaatgtcccctcctgttcagatgcctgatttgattgat
acaggtgatcaagatgatctagcaactcaaagttcaggacaggaaagccatggacagaat
attggaaagagtgcatatgttaattcagttgatgatttgcttggtggtgaacctattgct
gatataagtaccactactgatgctaatggaagtgatccatttgcagatgtatcattccac
gagtcagagattaaggagactaatgacctattctcagggttgacagtagaagagaaatca
tcagctgccatgcatggtatctcttcgccaaacaaaaatgaattaccggatatattaggt
agcaaccctgatccattcatccaagaaagtgttacggacaaaggaactgtcattgatttg
atgcctggtttgaaccttaatggagcaggccaggctcagcctgcagtcaatgcagaacca
aatagtaacctcagtggttcacagttctttgacacaaacaatcagactagccatgtggca
agtgctgcagcattgaatggtattcttggccaaaactctttttatcaacagactccctca
cagtacagcgtgcctcaacatatgctgttcaatcagtcatttcctgggcagcaattaaat
tatgatgcgatgaggattcttcttgctcagcagcagcagctgctgctgcaaaattttgga
aatttcaatgctggactcggacattcatctttcaattcaatgaacagcgaaaatgcatct
gtgcttccagatattttcaattcaagtaaccaaccacaaaatcatgttgcagtgatgagc
aattcaaagaaagatgacactaaagctttcgattttgtctcggtatgcatttctatctag
DBGET
integrated database retrieval system
