Phragmites australis (common reed): 133892342
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Entry
133892342 CDS
T10575
Name
(RefSeq) exosome complex component RRP41-like isoform X1
KO
K12587
exosome complex component MTR3
Organism
paua Phragmites australis (common reed)
Pathway
paua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133892342
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133892342
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
133892342
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
133892342
NCBI-ProteinID:
XP_062189031
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Position
15:complement(2944063..2946958)
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AA seq
259 aa
AA seq
DB search
MAAASGTYSPAGAAGGKRRERREELRRHLAEDADWPRADGRSLHDCRPAFMQTGPTTAAS
GSAYAEFGKTKVIVSVFGPRESKKAMMYSDVGRLNCNVSYTTFATPVRGQGLDNKEYSSM
LHKALEGAVMLHTFPKTTVDVFALVLESGGSDLPIIISCASLALADAGIMMYDLVTSVSV
SCSGKNIIIDPTSDEEAWQDGSLMVAFMPARKEITQLALTGEWSDGKITNAVELCMDACS
KLGDILRDRLKDTATLTSE
NT seq
780 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcgtcagggacgtactccccggcgggggcggccggggggaagcggcgggag
aggagggaggagcttcggcgccacctcgccgaggacgcggactggccccgcgccgacggg
cgctccctccacgactgccggcccgcgtttatgcaaacaggaccaactactgctgcatca
gggtctgcttatgcggaattcgggaagacaaaggtcattgtatcggtgtttgggccaaga
gaaagtaagaaagcaatgatgtacagcgatgttggtaggctcaactgcaatgtgagctat
acaacatttgccactccagtgcgtggacagggattggacaacaaagagtactcatcaatg
cttcataaagctttggaaggcgcagtgatgctacacacttttccaaagaccacagttgat
gtttttgctttggttctcgagtctggtggcagtgatcttcccatcattatatcatgcgct
agtcttgcactggcagatgctggaatcatgatgtatgaccttgttacatctgtatccgtg
tcctgttccggaaagaacatcatcatcgatccaacctcagatgaggaagcatggcaagat
ggaagccttatggtagcttttatgccagcccgcaaggagatcacacaacttgcgctcact
ggagagtggtctgatggcaaaatcaccaatgcagtggagctctgtatggatgcctgcagt
aagcttggcgacatactgcgggaccgattgaaagataccgccaccttgacgagtgaatga
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integrated database retrieval system
