Phragmites australis (common reed): 133892849
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Entry
133892849 CDS
T10575
Name
(RefSeq) cell differentiation protein rcd1-like isoform X1
KO
K12606
CCR4-NOT transcription complex subunit 9
Organism
paua Phragmites australis (common reed)
Pathway
paua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133892849
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133892849
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
133892849
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Gene cluster
GFIT
Motif
Pfam:
Rcd1
Motif
Other DBs
NCBI-GeneID:
133892849
NCBI-ProteinID:
XP_062189801
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Position
15:28375754..28385346
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AA seq
332 aa
AA seq
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MRRRGAARPGVGSGRRSRGASKPFPRAPGLGGFRGGSILGKSSPDPKRKGYALSELRKKR
ETLKDLAPLLWHSFGCMFVLVQEIISVYPALSPPTLSASASSRACNALALLQSVASHPET
RAPFLKALIPLYLYPILDTVSKARPFEYLRLTSLSVIGALVKVDDTEVINFLVQSGVTPL
CLRIMEMGNELSKTASTFIVQKILLDDIGLQYACATADRFFSVSSVLATMVISLADQPST
RVLKHVLRCYLRLTDDPRARIALQISLPEVLKDGTFYNCLREDPAAMQCLQRLLNNLFGG
SVGGAPHPGPGHAPGGSPGGASQAGPSCAPGI
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atgcggcggcgtggagcggctcgaccgggcgtgggctcggggaggaggagtcgcggcgcc
tcgaaaccctttccccgagcgcctgggcttggcggcttccgtggaggctccatcctaggc
aaatcttctccagatccaaagcgcaaagggtatgcactgtccgagttacgtaagaaaagg
gagacgttaaaggatttggctccactgctgtggcactcttttggctgtatgtttgttctg
gtccaggaaattatatcagtctaccctgcactttcacccccaacattatcagcaagcgca
tcaagccgagcctgcaatgcactcgcacttcttcagtctgttgcatcacaccctgagacc
agggccccttttctaaaagctctaattcccctgtacttgtacccaatcttggacactgtc
agcaaggcccgaccttttgagtacctgcgtctcacaagccttagtgtcattggtgctctt
gttaaggtagatgatactgaagttatcaattttctggtgcaaagtggagtcactcctctg
tgtttgcgaatcatggagatgggcaatgagctctcgaaaacagcatccactttcattgtc
caaaagattctgctagatgatattgggttacagtacgcttgtgccactgcagaccgtttc
ttctctgtatccagtgttttagcaaccatggtaatttcactggctgatcagccttccacc
agggtgctgaagcacgtcctccgctgttacctcaggctgacggatgatcccagggcccgt
attgcactgcaaattagccttcctgaggttctgaaagatgggacattctacaactgcctt
agggaggaccctgctgcaatgcagtgcctccaacgacttttgaacaatttgtttggtgga
agcgtgggtggagcacctcatccaggcccaggtcatgcgccaggtggaagcccgggtgga
gcctcccaggcaggcccaagttgcgcaccagggatataa
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