Phragmites australis (common reed): 133892983
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Entry
133892983 CDS
T10575
Name
(RefSeq) uncharacterized protein LOC133892983
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
paua Phragmites australis (common reed)
Pathway
paua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133892983
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133892983
03041 Spliceosome [BR:
paua03041
]
133892983
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
133892983
Spliceosome [BR:
paua03041
]
Complex B
Other components
Prp19-related factors
133892983
Complex C
133892983
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
Mad3_BUB1_I
TPR_2
TPR_12
ARM_TT21_C
ARM_TT21
TPR_15
Motif
Other DBs
NCBI-GeneID:
133892983
NCBI-ProteinID:
XP_062189952
LinkDB
All DBs
Position
15:2294100..2299918
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AA seq
846 aa
AA seq
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MSQNTSSVRERLDHARPHPIDHPAYSSLNNTFERALATMHKMPHVWILYLTSLLDQRLLT
RARRAFDRALRALPVTQHDRIWPLYLRLASIQACPVETSLRVFRRYLQFDRSHAENFINF
LISANRWQEAADRLASVLNEDGFRSVKGKTGHQLWLELCEILTKHADEVAGLKVDAILRG
GIRKFTDEVGKLWTSLADYYVRRALFEKARDVFEEGVASVVTVKEFSVVFDAYTQFEQSM
LAAKLEAAEEEGVEDEDERGGRKNGIGKLSKEFLEGFWLNAEDDTDLRLARFERLLDRRP
ELLSSVLLRQNPHNVEEWHRRVKLFEKDPARQVATYVEAVKTVDPMKAVGKPHTLWVAFA
KMYEKHNCLDSAEDIFKRATQVNYKAVDHLASIWCEWAEMELRHNNFDKAIELMRQATAE
PSVEVKRRASAEGNEPVQMKVHKSLKLWSFYVDLEESLGTLESTRDVYERILDLRIATPQ
IILNYAFLLEEHKYYEDAFEVYERGVKIFKYPHVKAIWVTYLTKFVQRYRRSKIERAREL
FHEAVQQAPPEEKKAIYLQWAKFEEDYGLAKRAMNVYDESVRAVPNSEKMSMYEIYIARA
AELFGVPRTRQIYEQAIESGLPDRDVMTMCLKFAELERSLGEIDRSRAIYVHASNYADPN
THSVFWKKWNDFEIQHGNEDTFREMLRIKRTVTASSSQTHFILPEYLMQRDERLNLDEAV
DALKRAGVPEDEMAALERQLAPGPSSAPPAAPSTATTAANRRMNFVSAGVEAQAESSRQQ
TANNEDIELPDESDDEEADVQIAEKSVPAAVFGELGKRAAENREESSDGQENEQLGALER
IKRRRQ
NT seq
2541 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcaaaatacatcgtctgtccgcgagcgcctcgaccacgcgcgcccgcaccccatc
gaccacccggcctactcctccctcaacaacacctttgagcgggcgctcgccaccatgcac
aagatgccgcacgtctggatcctctacctcacctcgctcctcgaccagcgcctgctcacg
cgcgcgcgccgcgccttcgaccgcgccctgcgtgcgctgccggtcacacagcacgaccgc
atctggccgctctacctgcgcctagcatcgatccaggcctgccccgtcgagacgtcgctc
cgcgtgttccgccgctacctccagttcgaccgctcccacgcggagaacttcatcaacttc
cttatatcagccaaccgctggcaagaggccgccgaccgccttgcatctgtgctcaacgaa
gatggcttccgctccgtcaaggggaagaccgggcaccagctctggcttgagctctgtgaa
atcctcaccaagcacgctgatgaagtcgccgggctcaaggtggacgccatactgcggggt
gggatacggaagttcactgacgaggttggcaagctgtggacttcgctggccgattactat
gtaaggagggcacttttcgaaaaagccagggatgtatttgaggagggggttgcctcggtg
gtcacagtaaaggagttcagcgtggtgtttgatgcatatacacaatttgagcagagcatg
ctcgcggcaaagctggaggctgccgaggaagaaggggttgaggatgaggatgagcgaggg
ggacggaagaacgggattggaaagttatcgaaggaattccttgagggattctggttgaac
gccgaggatgatactgatttgaggttggcaaggttcgagcggctattggatcgcagacca
gagctccttagcagtgtgctgttgcgacagaatccacataatgtagaggagtggcacagg
agggtgaaactttttgagaaggatcctgcaaggcaagtagcaacatatgttgaggctgtc
aaaactgtggacccaatgaaggcggttggtaaacctcatactctatgggtggcgtttgca
aagatgtatgagaaacataattgtctagatagtgctgaagatatctttaaacgggctaca
caagtgaactataaggcagttgatcacttagccagtatatggtgtgagtgggcagagatg
gagttgaggcacaacaatttcgacaaggccattgagctgatgaggcaagcaacagcagag
ccctctgttgaggttaagaggcgagcttctgctgaggggaacgagcctgtccaaatgaaa
gtacataaatctttgaaactatggagcttttatgtggatctggaggagagccttggaacc
ttggaatctacccgtgatgtttatgagagaatattggatttgcgaattgccactccgcaa
ataattctcaattatgcatttcttctggaggagcacaagtattatgaagatgcatttgaa
gtgtatgaaagaggtgtgaagatattcaagtatccccatgttaaagccatctgggtgacc
tacctcactaagtttgtacagaggtaccggagaagcaagatagagcgagcaagagagctg
ttccatgaagctgtccaacaggctcctccagaggaaaaaaaggccatatatttgcaatgg
gctaaatttgaggaagactatggtcttgcaaaacgtgctatgaatgtatatgatgaatct
gtaagggctgttcctaacagtgaaaagatgagcatgtatgaaatatatatagcacgagct
gctgaactgttcggtgttccaaggacaagacaaatatacgagcaagcgattgaatctggc
ctcccggacagagatgttatgacaatgtgcttgaaatttgcagaattagaaagaagcctg
ggagaaatagaccgttctcgtgccatctatgtgcacgcatccaactatgctgatccaaac
acccattccgttttttggaagaagtggaatgattttgagatccagcatggtaatgaagac
acgttcagggaaatgcttcgcatcaaacgtacagtgactgctagcagcagtcagacgcat
ttcatactcccagagtacttgatgcagagggacgagaggctcaacctggacgaggcagtt
gacgctctgaagcgtgctggcgtccctgaggatgagatggcagccttagagaggcaacta
gctcctggaccatcctcagcaccaccagctgctccaagtaccgctacgaccgctgctaac
aggaggatgaattttgtcagtgctggagtagaggcgcaggctgagagcagcaggcaacag
actgctaacaatgaggacattgagctgcccgacgagagcgacgatgaggaggcggatgtc
caaattgcagagaagagtgttcctgctgcagtgttcggagagctgggcaagagggctgca
gagaacagggaggaaagctcagatggccaagagaatgagcagctgggcgcccttgagagg
ataaagagacgacgtcaatag
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