Phragmites australis (common reed): 133893030
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Entry
133893030 CDS
T10575
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
paua Phragmites australis (common reed)
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
paua03041
]
133893030
Enzymes [BR:
paua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133893030
Spliceosome [BR:
paua03041
]
Complex C
Other components
Complex C specific factors
133893030
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Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
AAA_22
HA2_N
DEAD
AAA_19
AAA_30
AAA_29
AAA_7
nSTAND3
AAA_23
Motif
Other DBs
NCBI-GeneID:
133893030
NCBI-ProteinID:
XP_062189991
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Position
2:complement(1762361..1774374)
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AA seq
700 aa
AA seq
DB search
MSRFWKPGSDKPSTLLVDDEEGGVVFLPSSTSSASSSGFGYASLERQRQRLPVYRYRKAI
LYLVERHATTIIVGETGSGKSTQIPQYLKEAGWADGGRLIGCTQPRRLAVQTVASRVAEE
VGVRLGEEVGYTIRFEDQTNPGMTMIKFLTDGVLIREMMEDPLLTKYSVIMVDEAHERSI
STDMLLGLLKKIQRRRPELRLIISSATIEARSMSTFFNIRRKSSLLGSSDHLPSPEPAIL
SVEGKGYTVEIHYVEEPVSDYLQTAVNTVLLIHEKEPPGDILVFLTGQDDIDAAVKLLNE
EIQHLGRHYLDLLILPLYSSLPRGDQDLIFASTSKGTRKVVISTNIAETSLTLEGVVYVV
DSGFSKQKCYNPISDIESLVVVPISKASARQRAGRAGRMRPGKCFRLYTEEYYLNEMQSE
GIPEMQRSNLVSCIIQLKALGIDNILGFDWPASPSPEAMIRALEVLFSLGILDEDAKLTV
PMGFQVAEIPLDPMISKMILLANDFGCSDEILTIASFLSVQSVWVSMRGVKKEFDEAKLR
FAAAEGDHVTFLNIYRGFHKSGKSSQWCYKNFLNYQALKKVIDIREQLLRVMKRFGIHLK
SCDRDMQAVRKAIIAGSFANACHLEEYSQNGMYKTIRTSQEVYIHPSSVLFRVNPKWVVY
QSLVSTDKHYMRNVIAIEPSWLTEAAPHFYQFRSPNPALH
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaggttctggaaaccggggtcggacaagccgagcaccctgctcgtcgatgacgag
gagggcggcgtcgtcttcctcccctcctccaccagctccgcctcctcctccgggtttggg
tacgcgagcttagagaggcagcggcagcggctgccggtgtacaggtaccgcaaagccatc
ctctacctggtggagcggcacgccacgaccatcatcgtcggtgagaccggcagcggcaag
tccactcagatccctcagtaccttaaagaggctggttgggctgacggtggtcgacttata
ggatgcactcagcccagacgattggctgtgcagacagttgcatcaagagtagcggaagag
gttggcgtgagacttggagaagaagttggttatacaatccgatttgaagatcaaacaaat
ccgggtatgaccatgatcaaatttctcacagatggggtattgatcagagaaatgatggaa
gatcctcttctgaccaaatatagcgtaattatggtagacgaagctcatgaaaggtccatt
tcaactgacatgttgcttggactcttgaaaaagattcaacgccggcggcctgagttgcgt
ctgatcatctcctctgcaacgattgaagcaagatccatgtcaacctttttcaacattagg
cggaagagttccttgcttggatcttctgatcatttgcccagcccagaacctgctatactt
tctgttgaaggtaaagggtacacggtggaaattcattatgttgaagaacctgtctcagac
tacttgcagactgctgtgaatactgtacttcttattcatgaaaaggaaccgccaggggat
atcttggtgttcttaactggccaggatgatatagatgctgctgttaagttgctaaatgaa
gagattcaacaccttggacgacactatttggacttgctgattttgcccttatactccagc
cttcctcggggagatcaagatctcatttttgcttctacttcaaaagggacaaggaaagtt
gtgatatcaaccaacattgctgagacgtcattgactctggagggtgtggtgtatgttgtt
gatagtgggttttctaagcagaagtgttataatccgatttctgacatcgagagtttagtt
gtcgtacccatatccaaggcgtccgcaaggcagagagcaggcagagctggaaggatgcga
cctgggaagtgctttaggctttataccgaggaatattaccttaatgaaatgcagtcagaa
ggcattccagaaatgcaaaggtctaacctagtctcctgcataatacagttgaaagccctg
ggcatagacaacattttagggtttgattggcctgcgtctccatcaccagaggcaatgatt
cgtgctctcgaagttctattctccttaggaatccttgatgaagatgccaaactaactgta
cccatgggcttccaagttgctgagatccctctggaccccatgatttcgaaaatgatcttg
ttagccaatgattttggatgctctgatgagatattgacgatagcatcatttctatctgtt
cagtctgtgtgggtttctatgaggggagtgaagaaggaatttgatgaagccaagcttcgt
tttgctgctgctgagggagatcatgtaacattcctgaatatctacagaggatttcacaag
tctggaaaatctagtcaatggtgttacaagaactttttgaattaccaagcactgaagaag
gttattgacatcagggagcagcttctcagggtaatgaagaggtttggaatacatttgaag
tcatgtgacagagatatgcaggcagttagaaaggccataattgctggttcatttgctaat
gcatgtcatttggaggaatacagccagaatggaatgtataaaacaattaggacctcacaa
gaagtttacatacatccatcttccgttctctttagggttaatccaaagtgggttgtctac
cagtctctcgtttcaactgataagcactatatgaggaatgttattgccattgaaccatca
tggcttactgaagctgcaccacatttttatcagttccgatcacccaatccagctctccac
tag
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