Phragmites australis (common reed): 133893150
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Entry
133893150 CDS
T10575
Name
(RefSeq) uncharacterized protein LOC133893150 isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
paua Phragmites australis (common reed)
Pathway
paua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133893150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paua03021
]
133893150
03041 Spliceosome [BR:
paua03041
]
133893150
03036 Chromosome and associated proteins [BR:
paua03036
]
133893150
Transcription machinery [BR:
paua03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
133893150
Spliceosome [BR:
paua03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
133893150
Complex B
133893150
Complex C
U2 SnRNP specific factors
133893150
Chromosome and associated proteins [BR:
paua03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
133893150
TFTC complex
133893150
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
Motif
Other DBs
NCBI-GeneID:
133893150
NCBI-ProteinID:
XP_062190099
LinkDB
All DBs
Position
15:24681884..24695125
Genome browser
AA seq
1346 aa
AA seq
DB search
MGPCTAGDASASAASSSSGLSTSAPAAADAGATHYLAKRVLRGSAVLHVAEGYFRSPDSA
DVVLSKETSLELVAVGDDGVLLSICEQDMFGIIKDIGVLQWHYRHFGVIPEIERKDLLVV
LSDSGKLSILYFCSEMHRLFAIANIELSKPGNLKHQLGRILAIDRESNFVAVSAYEDKFA
LIHVSECQSPHGTGRGTISEKKYFYPPENEEDARIVSGASRTSIRGTIWTMCFISTSLDE
ECYPVLAMIIHRKGSDVNDLSLFGRDSSSCGIDHISSYSETGPLALDISEIPEMFGFALL
FRVGDALLLDLRNPRNVCCIRRISLTTSLFGEPVTIEDSCPGLDVNDDVAACALLELRDS
GNSIMKDEGYMDIDGVDNRGNVKSRIICSWSWEPPDPVRRGCARLLFCLDDGEFHTLEFT
LDVDGVKLYMFEFIDRGFPCKPLLWLKNRMIIGFVEMGDGMIFKLGHRRLLHKSTIQNVA
PILDLAIADYHGEKQDQMFACCGMCPEGSLRVLRNGVNVEKLLRTDAIYQGVTGLWTLRM
KITDVYHSFLVLSFVEETRILSVGLSFNDISDAVGFQPDVCTLACGLVADGLLVQIHSKG
VKLCLPTVYAHPEGAPLTSPVCTDWYPDVTISVGAVGHNIVVVATSNPCCLYILGVRPSP
SFQNELYETQHVQLRYEISCISIPQEDWRPDNVASSCAKVNVHRFAVIGTHKPSVEIISL
EPGETFRLLTVGPISVNNALGAPISGCIPENVRFVAAERFYILAGLRNGMLLRFESEASE
HYFPGSFYKDSSTLSVNTFLQLISVRRIGITPVVLVPMHDSANADIIVLSDRPWLLHAAR
HSLAYSSISFLPASHVTPVSSVDCPNGLLFVAENCLHLVEMVRGKRLNAQKFSIGGTPRK
VLYHSESRTLLVLRTGLSGESCSSDIVQVDPQNGVLLSRFKCEPGETAKCMQIAKIGSDQ
VLIVGTSKSAGRPMMPNGEAESSIKGRLIVLTLEAVESPRESSSYIPTSSLNPSSHTGSP
FHEIVGYTTEEFSSNSLCSSPDDFFCNHIHVEQMTGHLRALTHATLSGAVLAVNPYLDRY
VLAAAGNTLCVFGFANENPHRMKRCAVGKTRFTITCLKTFASRIAVGDCRDGVLFYSYNE
SLRKLELIYSDPAQRLVGDVALLNCDTAVVSDRRGSISVLSCARLEVSESPQKNLAVDCS
FYMAETTMSIRKASFRYRLPIDDDTDPVSESAYNCIVASTLLGSVFVMIPLTSEEHQLLQ
DVQERLSVHPLTAPVLGNDHAEFRQRGVPPGVSPILDGDMLVQFLELTGKQQQAVLTHSL
PGKGPRRPASVFQVLRTLERVHYALN
NT seq
4041 nt
NT seq
+upstream
nt +downstream
nt
atgggcccctgcaccgccggcgacgcctccgcatcggcggcgtcttcctcgtcgggcctc
tccacctccgctcctgccgccgccgacgcgggcgccacccactacctcgccaagcgtgtg
ctccggggcagcgccgtgctccacgtcgccgagggatacttccgctcgcccgactccgcg
gacgtcgtcctcagcaaggaaacttcactagagttggttgcagttggtgatgatggtgtt
ttattgtcaatctgcgaacaagacatgtttgggattataaaagatattggtgtattgcaa
tggcactatagacacttcggtgtgattccagagatagaacgcaaagatcttctggttgtg
ctttcagattctggaaagctttccattctttacttttgttctgagatgcataggctcttt
gcaattgccaatattgagttatccaaaccaggaaacctgaagcatcagctgggaagaatt
ttagctatagatcgagaatctaattttgttgctgtcagtgcgtatgaggataagtttgct
cttatacatgtttcggagtgtcagagtccccatggtactggtagaggtaccatttctgag
aagaaatatttttatccaccagaaaatgaagaggatgcaagaatcgtaagtggtgcatct
aggacaagtatacgcggtacaatatggaccatgtgcttcatatcgacatccctagatgaa
gaatgttatccagtgctggcaatgataattcacaggaagggctctgatgtgaatgacttg
tcattatttggacgcgactccagcagctgtggtatcgaccacatctctagttattcagaa
actggaccgttggcacttgacatatcagaaattcctgaaatgtttggctttgcacttctg
tttcgtgttggtgatgctttactgttggatcttagaaacccaaggaatgtctgttgtatc
cgcagaatcagtttgacgactagtctttttggagagccggtcactattgaagattcctgt
ccaggattagatgttaatgacgatgtggctgcttgtgctttgctagaattgagagattct
ggtaatagtataatgaaggatgagggttacatggacattgatggtgttgacaacagaggt
aatgtaaaatcaaggataatttgctcatggagctgggagccacctgaccctgtcaggcga
ggatgtgcaaggctgctgttttgcttagatgacggagaatttcatactctcgaatttact
ttggatgttgatggagtgaagttatacatgtttgagtttattgataggggttttccttgc
aaacctcttttatggttgaaaaatagaatgataataggatttgtagagatgggagatgga
atgatctttaagcttggccatcgtagattgttgcataaaagtacaattcagaatgtagca
ccaatattggatctggcaattgctgactaccacggtgagaaacaggatcagatgtttgcg
tgttgtggaatgtgccctgagggttctctgcgagtattacggaatggtgtcaatgtggag
aaacttctgaggactgatgctatctatcagggtgttactggtttgtggactttgagaatg
aagataactgatgtttaccactcttttcttgtgttatcatttgttgaagaaaccagaata
ctgtcagtaggactaagttttaatgacatcagtgatgctgtgggattccagcctgatgtt
tgcactttggcatgtggtttggtggctgatggtttgcttgtgcaaattcacagtaaaggt
gtaaagctctgtttgcctacagtatatgctcaccctgaaggtgcccccttaacttctcca
gtttgcactgactggtatcctgatgtcactatcagtgttggtgccgtaggacataatatt
gttgttgttgctacatcaaatccttgttgcctctatattcttggcgtcagaccatcacca
tcttttcagaacgagttgtatgagacacaacatgttcaattgagatatgaaatatcttgc
atatccatcccgcaagaggactggagacctgataatgtagcttccagttgtgctaaagtt
aatgtccacaggtttgctgtcattggaactcataaaccttctgtggaaataatctccttg
gagcctggagaaacatttaggctactaactgtcgggcctatctcagtaaacaatgcgctt
ggtgctcctattagtggttgtatacccgaaaatgttaggtttgttgcggctgagaggttc
tacattcttgcaggcttgagaaatggaatgctactcaggtttgagtcagaagcaagcgag
cattatttccctggttccttctataaggactcttctaccctttctgttaatacatttctt
caattgatttctgtacggcgtattggaattactcctgtagtcttggtaccaatgcatgat
tcagctaatgctgacatcattgttctcagtgataggccttggctattacatgctgctaga
cacagcctggcatattcatctatttcatttctgcctgcttctcatgtgacgccagtatca
tcagttgattgccccaatggtctgctgtttgttgctgagaactgcttgcacttggttgaa
atggttcgtgggaaaagattgaacgcacaaaagttttcaattggagggactccaaggaaa
gtgctataccatagtgaaagtagaacactgttggtactgagaactgggctaagtggtgaa
tcatgttcctcggatattgtccaagtagatccacaaaatggggtattgctttccaggttc
aaatgtgaacctggtgaaacagcaaaatgcatgcaaattgcaaaaataggaagtgatcaa
gttttaattgttgggactagtaaatctgctggacgcccaatgatgccaaatggtgaagca
gaaagcagtatcaagggacgcctgattgttttaacgttggaggctgttgaaagtcctcgt
gagagcagttcatatattccaacttctagtttgaatccctcttcacatactggctctcca
ttccatgaaattgttggatatacgactgaagaattctctagtaacagcctgtgcagtagt
cctgatgattttttctgcaatcatattcatgttgaacaaatgacaggacatttgagagca
ctaactcatgctacattgagtggtgcagttctcgctgtcaatccatatctggatcgttat
gtgttggcagctgctggtaatacgctttgtgtgtttggtttcgcaaatgaaaatccccat
cggatgaaaaggtgtgctgttggtaaaacacgatttacaataacttgtttgaagacattt
gcatcacggattgcagttggcgattgtcgtgatggtgtcctcttctattcttataatgag
agtcttaggaagttggaactgatctattctgatcctgctcaaagattggtgggtgacgtt
gctcttttaaattgtgataccgctgtggtatcagatcgacgtgggagcatatctgtttta
tcttgtgcaagattggaagtttcagaaagtccacagaagaacttagctgtagattgttca
ttttatatggctgaaacaactatgagtattcggaaggcttcatttaggtatcggcttcca
attgatgatgatactgacccagtgtctgagtcagcttacaactgtattgtggcaagtacc
ttgctggggagcgtattcgttatgattccgcttacaagtgaggaacatcaactgttgcaa
gatgtccaagaaagactctcagtacacccattgactgctccagtcttgggaaatgatcat
gcagaatttcgtcagcgtggtgttccaccgggagtatctcccattctggatggcgatatg
cttgtgcaattcttggaactcaccggcaaacaacagcaagcagtacttacacattctttg
ccaggaaagggcccacgtaggcctgcctcggttttccaggttctgcgaacattagagcgc
gtccactatgcactcaactga
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integrated database retrieval system
