Phragmites australis (common reed): 133893560
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Entry
133893560 CDS
T10575
Name
(RefSeq) probable polyribonucleotide nucleotidyltransferase 1, chloroplastic
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
paua Phragmites australis (common reed)
Pathway
paua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133893560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133893560
03016 Transfer RNA biogenesis [BR:
paua03016
]
133893560
Enzymes [BR:
paua01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
133893560
Messenger RNA biogenesis [BR:
paua03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
133893560
Transfer RNA biogenesis [BR:
paua03016
]
Prokaryotic type
tRNA degradation factors
133893560
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
OB_RRP5_4th
KH_2
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-GeneID:
133893560
NCBI-ProteinID:
XP_062190598
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All DBs
Position
15:27192647..27205978
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AA seq
887 aa
AA seq
DB search
MLASPAALHLLLPAPPPHHHRHLAFALPLPHPAPPLPLSSRRARRRAPRHGGARASAAAA
AEAESGGGGPAKFSVRIPVGDRQILVETGHIGRQASASVMVTDGETILYCSVCLADTPND
PSDFFPLSVHYQERLSAAGRTSGGFFKREGKTKDHEVLVCRLIDRPLRPTMPNGFYYETQ
ILSWVFSYDGIHSPDCLAITAAGIAVALSEIPNKQTIAGVRVGLINDQFVINPTTEQMEK
SELDLMMAGTDSAILMIEGYCDFLTEEKLLEAVEAGQVAIREICRAIDALVQNCGKKKMV
DAIDLPPPELYRHVEEISGDELVKALQIKEKIPRRKALSALEEKVITILSEQGYVAKDDS
SGTTESLADIVEDEDEDEVIVDGEVDEGDVHIKPVSRKPPRQLFSEVDVKLVFKEVSSKF
LRRRIVEGGKRSDGRSPWELRPINSQCGVLPRAHGSALFTRGETQSLAVVTLGGYQMAQR
IDNLVDTEESKSFYLQYSFPPSCVGEVGRIGAPSRREIGHGMLAERALEPILPPEEDFPY
TIRVESTITESNGSSSMASVCGGCLALQDAGVPIKFPVAGIAMGLVLDTQEFGGDGSPLI
LSDITGAEDASGDMDLKIAGNESGIAAFQMDIKVVGITLPVMEQALLQARDGRHHILNEM
SKCSPPPSKALSRHAPLIHVMKVKPNKVNLIIGSGGKTIKSIIEETGVDAIDTGDDGTVK
ITARDLSSLEKSKTIIANLTMVPKVGEIYRNCEIKSIAPYGAFVEIAPGREGLCHISELS
SSWLAKAEDAFKVGDHIDVKLIEINDKGQLRLSCRALLPDANTESNSKQQTSGSTKEKTP
QKDDLKMTRRPRRKKQSEPSGAENATTATLEKSTAAPATSQGSETAK
NT seq
2664 nt
NT seq
+upstream
nt +downstream
nt
atgctcgcgtcccccgccgccctccacctcctcctcccggcgccgccgccgcaccaccac
agacacctcgcgttcgcgctcccgctcccgcaccccgcgccgccgctcccactctcctcc
cgccgtgcgcggaggcgggcgccgaggcatgggggcgctagggcctccgccgctgctgcg
gcggaggcggagtctggcggcggaggcccggctaagttctccgtcaggatccccgtcggc
gaccgccagatactggtggagacgggccacattgggaggcaagcgagtgcttctgtaatg
gtcacggatggcgaaacaattctctactgttctgtttgtctggctgatacgccaaacgac
ccttctgacttcttccctttatcggttcactaccaagagcgcctttcagctgctgggaga
actagtggcggtttcttcaaacgagaaggcaagacaaaagaccatgaggttttggtatgc
agattgatagacaggcccctacgacccaccatgcccaatggcttctactatgaaactcag
attctatcctgggttttcagttatgatggcattcactccccggattgcttggctatcaca
gctgctggtatagccgtggctctatctgaaattccaaataaacaaacaattgctggagtg
agagttggcctgattaacgaccagtttgttattaacccaactactgaacaaatggagaag
tcagagttggatttgatgatggctgggactgatagtgccatattgatgattgagggctac
tgtgattttctgactgaggagaagctgcttgaagcagtggaagctggacaggtggcaatt
cgagaaatctgcagggcaattgatgctcttgtccagaactgtggaaagaagaaaatggtt
gacgctatcgacttaccgcctcctgaactctacaggcatgttgaagaaatttctggagat
gagttggtcaaggcattacaaataaaagaaaaaattcccagaagaaaagctctttcagct
ttggaggagaaagttataacaatactttctgaacaggggtatgttgccaaagatgattca
tcaggaaccactgaaagtttggctgatattgttgaggatgaagatgaggatgaagttata
gtggatggtgaagtagatgaaggtgatgttcacatcaagccggtttcaaggaagcccccc
cgtcagctattctcagaagttgatgtcaagctagtcttcaaagaagtttcatctaaattt
ttacgaaggcgcatcgtagagggcggaaagcgaagcgatggacggagtccttgggaactt
cgacccattaattctcaatgtggagtacttccacgagcacatggcagtgctctgttcacg
aggggagaaacacagtcactggctgtggtcactctaggtggctatcagatggcacaacga
attgacaaccttgttgacaccgaggaatcaaaaagtttctatcttcagtactcatttcct
ccatcatgtgttggtgaagttggtcgaattggagcacctagtaggagagagataggacat
gggatgcttgcagaaagggcactggagccaattttacctccagaagaggattttccttac
actattcgtgttgagagtactatcactgaaagtaatggctcgtccagcatggcttctgtt
tgtggaggttgtttagcacttcaagatgctggggttcctataaagtttcctgttgctgga
atagcgatgggcttggttcttgatacacaggaatttggtggagatggtagcccacttata
ctttctgatattactggagctgaagatgcctctggcgacatggatttgaagattgctggt
aatgaaagtggtatagctgctttccagatggacatcaaggtagtagggataactctacct
gtgatggaacaagcactccttcaagctagagacggtagacatcatattctgaatgaaatg
tcaaaatgttcacctccaccatcaaaagcactatctcgacatgctcccttaattcacgtt
atgaaggtcaaacctaacaaggtgaatttaataattggttctggtggaaagacaattaaa
agcataattgaggagactggagtagatgctattgatactggggatgatggcacggtgaaa
attaccgcaagggacttatcaagcttagagaagtcaaaaactataatagctaatcttacc
atggttcctaaagtcggagaaatttacaggaactgtgagatcaaatcaattgctccatat
ggtgcttttgtcgaaattgctccagggcgtgagggtttatgtcatatcagtgagttaagt
tcgagttggttggccaaggctgaggatgcttttaaagttggtgatcacattgacgtcaag
cttattgagataaatgacaagggtcaacttcgattaagttgtcgagctttgcttcctgat
gcgaatacggaatccaacagcaaacagcaaacaagtggttcaacaaaagagaagacaccg
caaaaagatgatctcaagatgacaaggagacctaggcgtaagaaacagtctgagccatct
ggagctgaaaatgccacaacggcgactcttgaaaagagcaccgctgctccagctacttca
caaggcagtgaaaccgcaaagtag
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