Phragmites australis (common reed): 133893689
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Entry
133893689 CDS
T10575
Name
(RefSeq) 5'-3' exoribonuclease 3-like
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
paua Phragmites australis (common reed)
Pathway
paua03008
Ribosome biogenesis in eukaryotes
paua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
133893689
09123 Folding, sorting and degradation
03018 RNA degradation
133893689
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paua03021
]
133893689
03019 Messenger RNA biogenesis [BR:
paua03019
]
133893689
03009 Ribosome biogenesis [BR:
paua03009
]
133893689
03016 Transfer RNA biogenesis [BR:
paua03016
]
133893689
Transcription machinery [BR:
paua03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
133893689
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
133893689
Ribosome biogenesis [BR:
paua03009
]
Eukaryotic type
Pre-60S particles
RNases
133893689
Transfer RNA biogenesis [BR:
paua03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
133893689
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
133893689
NCBI-ProteinID:
XP_062190768
LinkDB
All DBs
Position
2:2576543..2584328
Genome browser
AA seq
1069 aa
AA seq
DB search
MGVPAFYRWLAEKYPMVVVDVVEEEPVEIEGVKVPVDTSKPNPNGLEFDNLYLDMNGIIH
PCFHPEDRPSPTTFGEVFQCMFDYIDRLFIMVRPRKLLYMAIDGVAPRAKMNQQRSRRFR
AAKDAADAAEEEERLREEFEREGRKLPPKQQSQTCDSNVITPGTEFMAVLSVALQYYIHL
RLNYDPGWKQIKVILSDANVPGEGEHKIMSYIRGQRNLSGFNPNTRHCLYGLDADLIMLA
LATHEVHFSILREVVFTPGQQDKCFLCGQVGHLAANCEGKVKRKAGEFDEKGDAIVPKKP
YQFLNIWTLREYLEYEFRMPNPPFKIDFERIVDDFIFMCFFVGNDFLPHMPTLEIREGAI
NLLMAVYKKEFPSMGGYLTDSCTPDLNRVEHFIQAVGSYEDKIFQKRARLHQRQAERIKR
EKAQAKRGDDLDPHVRDDLIVPVARFQGSRLASGAVPAPYEQNGSHKDNKERNNRARKAA
RVSSSGSSIAAAIVEAENDVEAQERENKEELKSMLKDVLRDKSDIFNSENPEEDKVKLGE
AGWRERYYEEKFGARTPEQIEEIHRDVVLKYTEGLCWVMHYYYEGVCSWQWFYPYHYAPF
ASDLRGLGQLNIKFELGTPFKPFDQLMGVFPAASAHALPLQYRQLMTDPNSPIIDFYPTD
FEVDMNGKRYSWQGIAKLPFIDEARLLAEIRKVEHTLTPEEARRNSIMFDMLFVNGSHPL
SPYIYSLNSKFGHLPDKERNEIKEKLDPSASGGMNGYISLCSGDPCPPVFRSPVDRLEDI
VDNQVICSIYKLPDHHKHIAQPPVGVIIPKKTVEASDLKPPPVLWHEDSGRRPHDNSNRQ
NPAGAISGRQLGEAAHRLVINSLNARGRGQHSAPLMPYQTIMNGMHHLNVVHPIGNQGMP
PQVEQSAGRPGWYVPRGNVPNGQVPAYASSGSGHYQYERSGPSQYEQGNRGRQQSHPYAR
DSYHGTRGRAPPAYGYQQTGGNMYSSQPAAPLSGRPPSTYPGGHGGYHPPPYGGTQQWQQ
QPYSSYAGRGPYGGGAPHTRTDSRSQQPQNRCGALNRSSNRRPPSGYGR
NT seq
3210 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtcccggcgttctaccggtggctggcggagaagtaccccatggtggtggtggac
gtggtggaggaggagcccgtcgagatagagggcgtcaaggtgcccgtggacacctccaag
cccaaccccaacggcctcgagttcgacaacctctacctcgacatgaacggaatcatacac
ccctgcttccacccggaggacaggccctccccaacaacatttggtgaggtttttcagtgc
atgtttgattatatcgacagactattcatcatggttcgccctcggaagcttttgtacatg
gccattgatggtgtggctcctcgtgctaagatgaaccagcagcgctctagacgatttaga
gctgcaaaagatgcagctgatgcggctgaagaagaagaacggttacgtgaagagtttgag
agggaaggcagaaaacttcctccaaaacagcaatcacagacctgtgattccaatgttatt
actccagggactgagtttatggctgttttatcagttgctttgcagtactacatccatctc
aggttgaattatgatcctggatggaaacagattaaagttattttgtctgatgccaatgtt
cctggtgaaggggaacacaaaatcatgtcgtatattcgtggccaacggaatctctctggt
tttaacccaaacacacgccattgcctctatggcctggatgcagatctgatcatgttagct
ttagcaacacatgaagtgcacttctcaatactgagagaggttgtttttacaccgggacag
caggataaatgcttcttgtgtggtcaggttggacatctagcagcaaactgtgaaggaaag
gtgaaaagaaaagctggggagtttgatgagaagggtgacgctattgttcccaagaagccc
tatcagttcttgaatatatggacccttcgggagtacttagaatacgagttcagaatgcca
aacccacctttcaaaattgatttcgaacgcatcgtcgatgatttcatcttcatgtgcttc
tttgttggcaatgattttcttccacatatgccgacactagagattcgtgagggagctatt
aatttgctaatggcagtttacaagaaggaatttccttcaatgggtggctatttaactgat
tcttgcacgcccgatctgaatagagttgaacacttcattcaagcagttggctcctatgag
gataaaatatttcagaaaagagcccgcttacatcagcgtcaagcggaaagaataaaacgg
gaaaaggcccaagcaaagcgaggtgatgatctggatccccatgttagggatgatcttatt
gtacctgttgcacgttttcaagggtctcgcctagcctctggggctgtgcctgcgccgtat
gaacagaatggatctcataaagacaataaagaaaggaacaatcgagctcggaaagcagca
cgagtatcatcgtcaggttccagtattgcagctgccatagttgaagctgaaaatgacgtt
gaagcccaagaacgtgaaaacaaagaagaattaaagtcaatgcttaaagatgtacttcgc
gataaatcagatatttttaattctgaaaatccagaggaggataaggtgaagcttggtgaa
gcaggatggagggaaaggtactacgaagagaaatttggggcaagaacacctgaacagatt
gaagaaatacacagagatgttgttctcaaatacactgaaggtttgtgttgggtaatgcac
tactattatgaaggggtctgctcatggcaatggttctacccttatcactatgccccgttc
gcttcggatctaaggggtttgggtcagcttaatataaaatttgaacttgggacaccattc
aaaccttttgatcagcttatgggggttttcccagctgcaagtgcccatgcactaccacta
cagtatcggcaattgatgactgatccaaattcaccaataattgatttttatcctactgat
tttgaagtagatatgaatgggaagagatattcttggcaggggatagcaaaactgcccttt
attgatgaagctcgcttgttggctgagattagaaaagttgagcatactttgacgcctgaa
gaagcaaggagaaacagtatcatgttcgatatgctttttgtgaatggctcacatccactt
tcgccttatatctactctctcaacagcaaatttggacatctgcctgacaaagagagaaat
gaaattaaagaaaagcttgatccttctgccagtggaggaatgaatggctacatatcactt
tgcagtggagacccatgccctcctgtatttaggtctcctgtggataggctggaggatatt
gtggacaatcaagtgatatgttcaatctacaagcttccagatcatcataagcacatagcc
cagccgccagttggtgttatcatacccaagaagactgttgaagctagtgatctgaaaccg
cctccagtgctgtggcatgaagacagtggcaggaggcctcatgataatagcaacaggcaa
aacccagcaggagccatatcgggccgccaacttggagaggcagctcaccgactagtcata
aacagcttaaatgctcggggtagggggcaacatagtgccccattgatgccgtatcaaact
ataatgaatggtatgcatcatctgaatgtagtgcatcctataggcaatcaaggcatgcct
ccacaagttgagcagtctgctggacgtcctggttggtatgttcctaggggtaatgtaccc
aatggtcaagtaccagcttatgcatcgtcaggatcaggtcattatcagtatgaaaggtca
gggccttcacaatatgaacaaggtaatcgaggaaggcagcaatcccacccatatgcaaga
gatagctaccatggcactagaggtagggctccacctgcatatggataccagcagactggt
ggcaacatgtattcatcacagcctgctgctccgctgtcagggcgacccccttcaacttat
cctgggggtcatggaggctaccacccccctccatatggaggaacccaacagtggcagcaa
cagccatatagttcctatgctggaagagggccttatggaggtggggcacctcacacaagg
actgattcacgatcacagcaaccacagaaccggtgcggtgctttgaacagaagttcaaac
cggaggcctccatcaggatacggtcgataa
DBGET
integrated database retrieval system
