Phragmites australis (common reed): 133893707
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Entry
133893707 CDS
T10575
Name
(RefSeq) uncharacterized protein LOC133893707
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
paua Phragmites australis (common reed)
Pathway
paua03013
Nucleocytoplasmic transport
paua03015
mRNA surveillance pathway
paua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133893707
09122 Translation
03013 Nucleocytoplasmic transport
133893707
03015 mRNA surveillance pathway
133893707
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133893707
03041 Spliceosome [BR:
paua03041
]
133893707
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
133893707
Spliceosome [BR:
paua03041
]
Complex C
Other components
EJC/TREX
133893707
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
133893707
NCBI-ProteinID:
XP_062190784
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Position
15:3187646..3192732
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AA seq
797 aa
AA seq
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MSTYPVLNDQPIDQWKVTELKDELKRRNLPINGLKDDLLKRLFEAIQGEILDGEQTNGET
PPAEELNRGETPDSVDASVCQASMEQNVDEGPSEVTKQGDHVISVTEASDESFVAATEVS
QEVVIGTQEVVIGTVEVSQRTLDAVAEVEAPPVDVALAATDENHCETNGVGLKSASSGNT
IVKEVHPHSEGVGDTIEETPEDDTTKKMDVDDVPSDVTSINIKLGIEVDSKVLEQEAVTT
PPDTIALHADVFAATEAEDDTIKKMAIDDVPSDFTSSIVKLAVNVDCKIEHEEVPTQLVA
IAMHTDVVATAKSVIPENSFSENTLIYSKDHEDLKRMNGDCKTILCGPNDQVSEVNPDLG
SQIQCMSICHDNMSNLNAGNSDLVLEGKQEMVKPSSIIPSVGDDLLSLDGDKELHKSGTS
LQELASATNIDLDRKVDSTDGSSYEKLNLDRNSGDESMDEDVMESKHADSSMKSDDPRGK
TEVTSQHVSQEMTLLDTVTEGSSALTEVVVAEEKPTPTEKRKFEEQEVTTSYEQSKCQCQ
RNADTVSISDQQASKLTGTGTPKELFQSARKYSFGKSDSTSGDSAKERIVPPPQKPATTS
LRIDRFVRPFTLKAVQGFLGKTGSVCSFWMDHIKTHCYVTYTSLEEAVATRNAVYNLQWP
PNNGSYLVAEFVDPQEVKLKHELPPPSQVPIIPNTATVPEAAPFQQSKANQTIHFPHVAA
TSRGLLPTPPPLPKLPPTSDHGPARERLPPHPKNLEPALTFDDLFKKTQAYPRIYYMPLS
EEEVSAKLAARDNGKRG
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacataccctgtgttgaatgaccagccaattgatcagtggaaggtcactgagttg
aaggatgagctcaagaggaggaatcttcctatcaatggtttgaaggatgatcttttgaag
aggctctttgaggccattcagggtgagatacttgacggggaacaaacaaatggtgaaact
ccccctgctgaggagctgaacaggggtgaaactcctgattctgttgatgcatctgtttgc
caggcttcaatggaacaaaatgtcgatgaaggtccttctgaggttacaaaacagggagat
catgttatctctgttacagaagctagtgatgaaagtttcgttgctgctacagaagttagt
caggaggttgtcattggtactcaggaggttgtcattggtactgtggaagttagtcagaga
actttggatgctgttgcagaagttgaggctcctccagttgatgtggcactggcagcaact
gatgaaaatcactgtgaaactaatggagttggcctaaaatcagcttcaagtggcaatact
atagtgaaggaagtacatccgcattctgaaggtgttggtgatactattgaggagacccca
gaagatgacaccaccaagaaaatggatgttgatgatgtaccgtctgatgttaccagtatt
aacatcaagttaggcattgaagtggacagcaaagttctagaacaggaagctgtaaccaca
cctcctgatactatcgcattgcatgctgacgtttttgcagctacagaggcagaagatgac
actatcaagaaaatggctattgatgatgtaccttctgactttaccagttctattgtcaag
ttagctgtcaatgtagactgcaaaattgaacatgaagaagtacccacacaactagttgcc
attgcaatgcacactgatgttgttgcgactgcaaagagcgtgattcctgaaaacagtttc
agtgagaatacattgatatatagcaaggaccatgaagatctgaagcgcatgaatggggac
tgcaagaccatcctatgtggaccaaatgaccaggtatctgaggtcaacccagatctaggg
tctcaaattcagtgcatgtcgatttgtcatgataatatgtcaaacctgaatgctggcaat
tctgacttagtactagagggtaagcaggagatggtcaaaccatcatccatcattccctcc
gtaggtgatgatttgctgtcgttggatggcgacaaagagctgcataagagcgggacctct
ttgcaagaattagcatcagcaactaatatagacttggatagaaaagtggatagcactgat
ggtagttcttatgagaagctgaatttagacaggaattcaggtgatgaatcaatggatgag
gatgtgatggaaagtaagcatgctgattccagtatgaaatctgatgatcccagaggaaag
actgaggttacctcacagcatgtgtcacaagagatgaccctccttgataccgttactgag
ggttcctctgcacttactgaggtagttgtggctgaagagaagccaactccaactgaaaag
aggaaatttgaagagcaagaagttaccacaagttatgagcaaagcaaatgtcagtgccaa
cggaatgctgacactgtcagtatttctgaccaacaagcatccaaactaactggcactggt
actccaaaggaactctttcagtctgctaggaaatattcatttggcaagtctgattcaaca
agtggagattctgcaaaggagcgaatagtaccacctcctcaaaaaccagcaacaacttcc
ttaagaattgatcgatttgtgcgcccatttactctgaaagctgtgcaagggtttcttggt
aaaactggatctgtatgtagcttttggatggatcatatcaagacccattgctatgttaca
tacacttcattggaggaagctgtggccaccaggaatgctgtttacaacctccaatggccc
ccaaacaacggcagttatttggttgctgaatttgttgatccacaagaggtgaagctcaaa
catgaactccctcccccatctcaagtgccaatcattcccaacacagctacggtaccagag
gctgcacccttccaacagtcgaaggctaaccaaaccattcattttccccatgttgctgct
acttcaaggggcctgttgcccaccccaccgcctctccccaagctacctcctacatctgac
catggaccagcaagggagaggcttcctcctcatccaaagaacctggaacctgccctgaca
tttgatgatctcttcaagaagacacaggcctaccctaggatttactatatgcccttatcg
gaagaggaggtgtctgcgaagcttgcagctcgtgacaatggaaagaggggatag
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