Phragmites australis (common reed): 133894760
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Entry
133894760 CDS
T10575
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
paua Phragmites australis (common reed)
Pathway
paua03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133894760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paua03021
]
133894760
03019 Messenger RNA biogenesis [BR:
paua03019
]
133894760
Transcription machinery [BR:
paua03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
133894760
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
133894760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf-C2H2_2
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
133894760
NCBI-ProteinID:
XP_062190908
LinkDB
All DBs
Position
16:complement(6264955..6276489)
Genome browser
AA seq
956 aa
AA seq
DB search
MAGAAAGQVLERFRARLREEAGGEPGAAAVVCVYAEALRDLTFNCKPVITELTIIAGQHA
ALAARGIADAVCARVAEVPPDQILPSLYLLDSIVKNIGQEYVEHFAVRLQKVFCDAYCRV
HPNQYASMRHLFRTWWPVFPSSVLRGIEDDLQFSPSENKRPATAANLRQSESLSPRLSHG
IHVNPKYLEAQQKFKQATAVHQPAAHATRQVADVEEDQINGLTSYGSRGRPPSKLQKMQY
ADDPDQQETFRSLTGMIRATPPHLLSTHPSYVNPDGPLTNSRRNLSRSPPLDVLPRNVPP
KRALERLPPSHSVLGPDPRRLPDRNGRSRWAFDDGAQRPTISMLDEEYRKQSARELIDAY
GNCQGRDADERFTKMQRLDSNGMANKSSAQNWLTSEEEEYSWEDMSPTLTDRIRSSMPSL
PPTGTMRAGFPGANAGLLESDIGRHSFPNQAPRSSVDGPPLNLEDRITATGHVDMSTSSR
YPSNFGVQNEALLEYQSSEHTIDHGRIPTMPAPPWQQPTGLPLRVQAPEHSSVLNRILQP
ADGEMPAKRFAIGGTYDTLNVDIPLLERRRSSSASAPIEWPHSHHTQSQTLPPMPPDTKH
VRSATDSLEIRPFSSQGVSSSVFVPRHQYDALDRKTVSTGGLAQPPSQQPDLLSSSQQNE
ATILGNQAQPHRPLQFHPHPHQQESFRSFAPGMSVSPFQGQGGGAAPPVPFLPNSFSVPP
SVPPYGVPSTPSFPLPPLPPGPPPAPLQMGPSSQVGGPQPFVSGLLSNLMKQGVISLEPP
SQPEDSVGVDFSIDLKVRNESVINALYQDLPRQCKTCGLRFKCQEEHRAHMDWHVTKNRN
SKNRKQSSRKYYVTAEEWLRAAETVGNDGVPAFVASDPDTDRKEEKEVAVPADEEQTVCA
LCQETFEDFYSDETEEWMYKGAVYMNAPDGNIDGLERPQLGPIIHAKCRSGPSNIS
NT seq
2871 nt
NT seq
+upstream
nt +downstream
nt
atggcgggggccgcggcgggccaggtcctggagcggttccgcgcgcggctgcgcgaggag
gcggggggcgagccgggcgccgccgcggtggtttgcgtgtacgcggaggccctccgcgac
ctcaccttcaactgcaagcccgtcatcactgagctcaccatcatcgcggggcagcacgcc
gcgctcgctgccaggggcatcgccgacgccgtctgcgcccgcgtcgccgaggtcccacct
gaccagatattaccatccttgtatctgctagatagtattgtgaagaacataggacaagaa
tatgtagagcattttgccgttaggttgcagaaagtattttgtgatgcgtactgcagagtt
catcccaatcagtatgcttcaatgcggcacctctttcgtacctggtggccagtgtttcct
tcttctgtgctccgtgggattgaggatgaccttcaattctctccttcagagaataagcgt
cctgccacagcggcaaatctgcgtcaatcagagtcgctatctcctaggctgtctcatggc
atacatgtaaatccaaagtatctggaagcacaacaaaaattcaagcaggccactgcggtg
catcagccagcagctcatgccaccaggcaagtggctgatgtggaggaggatcagataaat
gggttaacatcgtatggttcgcgtggacggcctccttcaaagctccagaaaatgcagtat
gctgatgatcctgatcaacaagagacatttagatctcttactggaatgataagggctacg
ccaccacatcttttgagcacacatccctcttatgtcaatccagatgggccattaaccaat
tcaagaagaaacttgtccagatcgccacctcttgatgtgctccctaggaacgtgcccccc
aagagagcgctagagaggctaccaccatctcattctgtattgggacctgaccccagaaga
ttgcctgatcgaaatggtaggtcacgatgggcttttgatgatggtgcacagcggcctaca
atcagcatgcttgatgaagagtacaggaagcaaagtgcaagagaacttattgatgcatat
gggaattgtcaaggcagagatgctgatgaaagatttaccaagatgcagcgtctggattca
aatgggatggctaacaaatctagtgcacaaaattggctcacttcagaggaagaagagtat
tcttgggaggatatgagtccaactttgactgacagaatcagaagcagcatgccatcttta
cctcctactggaaccatgagagctggatttcctggggcaaatgccggactactggaatct
gatattgggaggcacagtttcccaaaccaagctcctcgatcatcagttgatgggccacca
ttaaatctcgaagataggattactgctaccggtcatgttgacatgtccactagtagcaga
tatccaagcaattttggtgttcagaatgaggctcttttggagtaccagagttctgaacat
accatcgatcatgggagaattcctaccatgccagctccaccttggcagcagcctactggt
ctgccattgcgagtacaagcacctgaacattcatcagtacttaatagaatactacaacct
gctgacggtgaaatgccagccaagaggtttgctattggtggtacatatgatacattgaat
gtagatatacccttgttggagaggcgcagatcgtcatctgcttctgctccgatagaatgg
cctcattctcatcatacccagtcacaaactttaccaccaatgccacctgatacaaagcat
gttagaagtgcaacagatagtctagaaattaggccatttagtagccaaggagttagttca
tctgtatttgttccacgacatcaatatgatgccttggatcggaaaacagtaagcactggt
ggcttagctcaaccaccgtctcaacagcctgatttgttgtcgtccagtcaacaaaatgaa
gctacaattttggggaaccaagctcagccccatcgtcccctgcagtttcatccccatcct
caccaacaggagtcatttagaagctttgcccccggcatgtctgtatccccattccaagga
caaggaggtggtgcagcaccaccagttccatttctgccaaattctttctctgtaccacca
tctgtgccaccctatggtgtgccgtctacgcccagttttcctctgccaccattacctccc
ggaccacctcccgctccactgcagatgggtccatcatcacaagttggcggccctcaacca
tttgtctctggactgttgagtaaccttatgaagcagggtgtaatttcactggaaccacct
agccaacctgaggactctgttggtgttgacttcagtatagacctcaaggtacgaaacgag
tctgtcatcaatgctttgtatcaggatcttccaaggcagtgcaaaacttgtggccttcgg
tttaaatgccaagaagagcaccgtgctcacatggactggcatgttacaaaaaatagaaat
tcgaagaatcgtaagcaatcttcacgcaaatattatgtcactgcggaggaatggttaaga
gcggcagaaacggtaggaaacgatggagttcctgcttttgtggcctcagatccagacacg
gacagaaaggaagagaaagaagtggctgttcctgctgatgaggagcaaacagtctgtgcg
ttatgtcaagagacatttgaagatttctacagcgacgagactgaagaatggatgtacaaa
ggtgcagtttacatgaatgcaccggatggtaacattgatggtctggaaaggccacaattg
ggacctattatccatgctaaatgtcgatctgggcccagcaatatttcttag
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