KEGG   Phragmites australis (common reed): 133894831
Entry
133894831         CDS       T10575                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 2-like
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
paua  Phragmites australis (common reed)
Pathway
paua03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:paua00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    133894831
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:paua03021]
    133894831
Enzymes [BR:paua01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     133894831
Transcription machinery [BR:paua03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     133894831
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 133894831
NCBI-ProteinID: XP_062190987
LinkDB
Position
16:complement(4888665..4899179)
AA seq 1234 aa
MGKLQTNGHQSPDGSGTEMMDFLNLDGDDEGEPHKKEDVKGERQPYVDFEEEQFDMDVDL
KGIPSVENEGKGKRVHEGKGKRVPIDFDVATFEKFCKEASRSFFNETGLVSHQINSYNDF
VSHGLQELFDSLGEITVEPDYDPSNKAGSWRHATIKFGRVELEEPQFSVNNNDLEVEKLK
LKPRHARLQKMTYSSRMKVEMTVQVYSLNGSDKDKTGKDTYVRRRDIMTETQQVTIGMLP
VMVKSNLCWLHRLHESDCQFDSGGYFLIKGMEKAFIAEEQRCLSRIWVTDHPSWDACYLS
KVNREKIYVKLVQSKSNESHSKVINLSFLGAIMPIWIVFFALGVSSDKEAFDMIDIQDCD
ASMVNIISSTIKESHEECEDFRTPGRARQYVDELIRKTKFPPEESFDEYVHRYMFPGVNG
NRSKALFLAYMVKCLLMAYSGNRKCDNKDDFRNKRLDLACQLLRRELWVHIKNAERRMVK
FMQRDLSADGNLQDLRHYVDASIVTNGLSRAFSTGSWRHPYKQERCSGIVATLRRANPLQ
MMSDLRKTRQWFAYSGTTGDARYPNPSYWGKLCFLSTPDGEKCGFVKNLAVTAMVSSVVR
EPLIDTLVSCGMKKLDEIPLKEIRGKDRIFLNGNLLGVCTDPGEFVLRLRSMRRSMRIDP
QVEIKRDKHNKEVRVFSDAGRILRPLLIVENLRRIMKPKDGIYSFQELMDKNIIELIGVE
EEEDIQCASGVRHLFAGYKEEGSFGYTHCELDPSFLLGLSCSITPFANHDSARRVLMQAE
KLSQQAIGYSPTNSHYRFDALSHQIYYPQRPLFKTVVADCLGKTDHNFGRKDDFTRPEYF
NGQNAIVSVSVHQGFNQEDSLVLNRASLERGMFRTLHFKNYKAQIENKDVTKRLKHRENI
KFGKMQSKRGRVDSLDNDGLPYIGASLQSGDIVIGKVTESGEDHSVKLMHTEKGMVEKVV
LSANDDGVNFANVTLRQSRSPCVGDKFASMHGQKGVVGLLDSQENFPFTRQGIVPDIVIN
PHGFPTRQTPGQLLEAALGKGIALGGTVRYATPFTTPSLDVITEQLHKAGFSRWGGESVL
NGQTGERMPSLVFIGPTFYQRLVHMSEDKVKFRNTGPVHPLTRQPVEDKKRFGGVKFGEM
ERDCILAHGAAANLHERLFMLSDFSQMHICQACERVANVIVRPVEGGKKVHGPYCLFCRS
AENIVRINVPYGAKLLYQELFSMGINLKFETEVR
NT seq 3705 nt   +upstreamnt  +downstreamnt
atgggaaaactgcaaacaaatggccatcagtcacctgatggctcaggtactgagatgatg
gatttcctgaatttggatggcgatgatgagggcgaaccacacaaaaaggaggatgtaaaa
ggggagcgacaaccttatgtggattttgaggaggagcagtttgatatggatgtagatttg
aaaggaataccatctgtagaaaatgaagggaaagggaagagagtccatgaagggaaaggg
aagagagtcccaattgactttgatgttgcaacctttgagaagttttgcaaagaagcatca
agatcgtttttcaatgaaactggactagttagtcatcagataaattcatacaacgatttt
gtctctcatggactccaagagctctttgattctctaggggaaattactgtagagcctgat
tatgacccatcaaacaaagcaggttcttggagacatgcaactatcaagtttggtagagtt
gagcttgaggagccacaattctcggtcaacaacaatgatcttgaggtggaaaaattaaaa
ttaaagcctagacatgctcgcctccagaagatgacatattcttctaggatgaaagtagaa
atgactgttcaggtgtattcactcaacggaagtgacaaggacaaaactggaaaagatacg
tatgttcgcagaagagatataatgacagaaactcaacaggtcaccattgggatgttaccc
gtcatggtgaagtcaaatttgtgctggctgcatagacttcatgaaagtgattgccagttt
gattctggtggatactttttgattaaagggatggaaaaggcattcatcgctgaagagcag
agatgtttatccaggatttgggtcacggaccaccccagctgggatgcatgctacttgtct
aaagtcaatcgagaaaagatttatgtaaaacttgttcagtctaaaagtaatgaaagccat
agcaaagtcatcaacctgtccttcctgggtgcgattatgccaatctggatagtgtttttt
gcactaggtgtatcatcagataaggaagcttttgatatgattgatatacaagattgtgat
gcttctatggtcaacataatatcatcaaccattaaagaatctcatgaagagtgtgaagac
ttccgtacaccaggtagagcccgtcaatatgttgatgagctgatcagaaaaacaaagttt
ccgcctgaggaatcgtttgatgagtatgttcataggtatatgtttcctggtgtcaatggg
aataggagcaaggctcttttcttggcttacatggtcaaatgtctgctaatggcttactct
ggcaatcgaaaatgtgataataaggatgatttccgtaacaagaggctagatcttgcttgc
cagttgcttcggagagaactctgggtgcatattaagaatgcagagagacgcatggttaag
ttcatgcagagagatttgagtgctgatggcaacttacaagatcttaggcattatgtggat
gcatcaattgttaccaatggtttgagccgggccttctccaccggttcctggcggcatcct
tataaacaagaaaggtgttcagggattgtagcaacccttaggagagcaaatccacttcaa
atgatgtctgacctgaggaagacgcggcagtggtttgcgtattccggaacgactggagat
gcgagatatccgaatccatcctactggggaaagttgtgtttcttgtccacccccgatggc
gaaaaatgtggatttgtgaaaaacctagctgttactgctatggttagctctgtagtgagg
gaaccattgattgatacattagtttcttgtggaatgaaaaaactggatgaaatccctcta
aaagaaattcgtgggaaagacaggattttcttgaatggaaacttgcttggagtgtgtaca
gacccaggcgaatttgttttgcgtttaaggagcatgaggcgtagcatgcgaattgatcca
caggttgaaatcaaaagagacaagcacaataaagaagttcgtgtattttctgatgcaggg
agaattctaagaccacttcttatagttgaaaatctaagaaggatcatgaagccaaaagat
ggaatatactcatttcaggaacttatggataaaaatataattgagctgattggtgttgaa
gaagaggaggatatccaatgtgcttctggagttaggcatctctttgcagggtacaaagaa
gaggggtctttcggctatactcattgtgaacttgacccttctttcttgctagggctgagt
tgcagtatcactccctttgccaaccatgattctgctcggagggttctgatgcaagctgaa
aaactatcacagcaggctattggatactcccctacaaattctcactatagatttgatgcc
ctttcacatcaaatctactatccacagagacccttgttcaaaactgtggtggcagactgt
cttggaaagacggaccataactttggaagaaaagatgactttactagaccagaatatttc
aatggccaaaatgcaatagtctcagtcagcgttcatcaggggtttaaccaagaagattct
ctggtattgaatagggcctctttagagcgtggcatgtttcggacactacatttcaagaac
tataaagcacagatcgaaaacaaagacgtcacgaaacgactcaaacatagggaaaatatt
aaatttgggaaaatgcaaagcaagagagggcgggttgacagtctggataacgatggttta
ccatatattggagcaagtcttcaaagtggtgacattgtcattggaaaggtcacagaatct
ggcgaagatcatagtgtcaaactgatgcatactgagaaagggatggtggagaaggtagtt
ctttcagcgaatgatgatggggtgaactttgcaaatgttactctaagacagtctcgctca
ccatgcgttggagacaagtttgccagcatgcatggacaaaaaggagtggttggactcttg
gattctcaggagaacttcccatttactcgccaagggatagttccagacatcgtgataaac
ccacacggctttccaactcgtcaaactcctggtcagttgcttgaagctgctttgggaaag
gggattgctcttggtgggacagtcagatacgcgacaccattcaccactccatccctggac
gtgatcactgaacagttgcacaaggctgggttttcaaggtggggtggcgagagcgtcctg
aacggccagaccggcgagaggatgccgtccctggtcttcatcggcccgaccttctaccag
cggctggtccacatgtccgaggacaaggtgaagttccggaacactgggccggtgcacccg
ctcaccaggcagccggtggaggacaagaagcggtttggcggtgtcaagttcggggagatg
gagcgcgactgcatcctcgcccacggcgctgctgccaacctccacgagcggctgttcatg
ctgagcgacttctcgcagatgcacatttgccaggcgtgcgagcgtgtggccaacgtgatc
gtgaggccggtcgaaggcgggaagaaggtgcacggcccctactgcctgttctgccgatcc
gcggagaacatcgtccggatcaacgtgccttatggcgcgaagctgctgtaccaggagcta
tttagtatggggatcaaccttaagtttgagaccgaggtccgctag

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