Phragmites australis (common reed): 133895194
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Entry
133895194 CDS
T10575
Name
(RefSeq) probable CCR4-associated factor 1 homolog 6
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
paua Phragmites australis (common reed)
Pathway
paua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133895194
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133895194
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133895194
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
133895194
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
133895194
NCBI-ProteinID:
XP_062191343
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Position
16:complement(27476915..27477754)
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AA seq
279 aa
AA seq
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MVRPPQAPVLQWPHRAAASTAGEGKGAKKRKAKIVDVWAHNMEAELELIRSVVPDYPIVA
VTTSPDVAVGRAPVPDPESSYDTFLLYIQSIRFAEVSLAFTNPRGELALRRFWRFHLGDF
GAGHLRFFEEMGVEVPARRANARRFGAALMAFETLVNPRVAWVTYDGAADLAYLISFIGA
GLPSQSCMFLPVCRTFFPAMYDLKVLAMHDELEGVPANDSSNALLEAPAPDAIMAGSNAL
AGCLGDPTSAVRLERYRGVLFGFDDDHSAPWRATERWTG
NT seq
840 nt
NT seq
+upstream
nt +downstream
nt
atggtgcgaccgcctcaagcccctgtactccaatggccgcatcgtgcagccgcctccacc
gccggtgagggcaagggcgccaagaagcgcaaggccaagatcgtcgacgtgtgggcgcac
aacatggaggcagagctggagctcatccgcagcgtcgtccccgactaccccatcgtggcc
gtcaccacttcccccgacgtcgccgttggccgcgccccagtccccgaccccgagagctcc
tacgacaccttcctattatacattcaaagcatccgctttgccgaggtcagcctggccttc
accaacccccgcggcgagctcgccctgcgccgcttctggaggttccacctcggcgacttc
ggcgccggccacctccgcttcttcgaagagatgggagtcgaggtgcccgcccgtcgcgcc
aacgcgcggcgcttcggcgcggcgctcatggctttcgagacgctcgtcaaccccagggtc
gcctgggtcacctacgacggcgccgccgacctggcgtacctgatcagtttcatcggcgca
ggccttccgtcacagagctgcatgttccttcccgtgtgcaggactttcttccccgcgatg
tacgacctcaaggtcctcgcgatgcatgacgagctcgagggggtcccggccaatgattct
agtaatgccctcctcgaagctcctgcgcctgacgccatcatggccgggtccaacgcgtta
gccggatgccttggggacccgacctcggcggtgcggctggagcgataccgtggggtgtta
ttcgggttcgacgacgaccacagcgcaccatggcgagctacggagagatggacagggtga
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