Phragmites australis (common reed): 133895436
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Entry
133895436 CDS
T10575
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
paua Phragmites australis (common reed)
Pathway
paua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133895436
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133895436
03012 Translation factors [BR:
paua03012
]
133895436
Enzymes [BR:
paua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133895436
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
133895436
Translation factors [BR:
paua03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
133895436
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
T2SSE
NACHT
nSTAND3
AAA_19
AAA_16
ATPase
PhoH
Motif
Other DBs
NCBI-GeneID:
133895436
NCBI-ProteinID:
XP_062191731
LinkDB
All DBs
Position
2:4365023..4381119
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AA seq
1240 aa
AA seq
DB search
MLLASVLRGRVRFLRRPRPLIMPSPLFLSRNPNPSPSKTSPYLSLPPASSAMSTSGVYVP
PMRRLRSVIACTNGSLAPPPSAAAQAQQTVRTPEWRKDGRSLSPPSPPQPRRREMPPLPR
PPQPEHCRQQSAGYARYAYDDFSEDDSDREMDRTSISSKGASTLDNVDEWKWKLHMLLRN
DDEQEIVSRERKDRRDFEQLAQLADRMGLHSRQYSRIVVFSKVPLPNYRSDLDDKRPQRE
VSIPAGLQREVDALLAGYLARKRMNSGTFPNAAFSRSSSSESFATDEGFFEQQDNQTSTS
AVMERIQRRKSLQLRNQQAAWQESNEGQSMMEFRRSLPSYKERQTLLEAISQKQVVVVSG
ETGCGKTTQLPQYILESEIDAARGASCSIICTQPRRISAISVSERVAAERGEKIGESVGY
KVRLEGMKGRDTRLLFCTTGVLLRRLLVDRSLKGVTHVIVDEIHERGMNEDFLLIVLKDL
LPRRPELRLILMSATLNAELFSSYFGGAPMIHIPGFTYPVRTQFLEDILESTGHRLTPYN
QIDDYGQEKSWKMQKQALRKRKSQIASVVEEAVEAADLRNYSSRTRDSLSCWNPDSIGFN
LIENVLCHICQKERPGAVLVFMTGWDDINALKEQLQANPLLGDPSKVLLLACHGSMASSE
QKLIFEKPEPGVRKIVLATNLAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPTWIS
KASARQRRGRAGRVQPGECYHLYPRCVYDAFADYQLPELLRTPLQSLCLQIKSLRLGSIS
EFLSRALQSPESLSVQNAIEYLKVIGAFDQNEELTILGKHLSMLPVEPKLGKMLIFGAIF
NCLDPILTIVSGLSVRDPFLTPFDKKDLAESAKLQFSCRDYSDHLALVRAYEGWREAERD
RAGYDYCWKKFLSVQTLKAIDSLRRQFLYLLKDTGLVDENMTLCNKWSRDENLVRAVICA
GLYPGVSSVVNKEKSISLKTMEDGQVMLYSSSVNGKEAKIPFPWLVFNEKVKVNSVFLRD
STAISDSILLLFGGNIQQGGLDGHLKMLGGYLEFFMNCDLALTYLSLKNELENLIHCKLQ
NPRMDIQTSEELLSAIRLLVTEDPCNGRFVYGRQEPRSKKAKTMLSSASMSSGGGNGGDN
PKNHLQTLLTRAGHNNPSYTTKQIKNSLFRSTVEFNGMQFVGQPCANKKLAEKDAAGEAL
NWLTRDGGGAPTDSRDTRDADPMSMLLKPPRRRRHSHRRS
NT seq
3723 nt
NT seq
+upstream
nt +downstream
nt
atgctcctggcctccgtcctgcggggtcgcgtccgcttcctccgccggccccgccccctg
atcatgccctcccctctcttcctctccaggaaccctaatcccagcccgagcaagactagc
ccctacctctcgttgccccccgcgtcctccgccatgagcaccagcggggtctacgtgccg
cccatgcgccggctccgctccgtcatcgcgtgcaccaacgggagcctcgcgccaccgccg
tccgccgcggcgcaggctcaacagacggtgcggacgccggagtggcggaaggacgggcgc
tcgctcagccccccgtcgccgcctcagccacggcggcgcgagatgcctcccctgcctcgg
ccgccccagccggagcattgccgacagcagagtgctgggtacgcccgctacgcctatgat
gatttctccgaggatgactcggatcgggagatggaccgcacctcgatctcgagcaagggt
gcatccactttagataatgttgatgaatggaaatggaaactgcacatgcttctccggaac
gatgatgagcaagagattgtctcaagggaaagaaaggataggcgagattttgaacaactt
gcccaactggctgatcgaatgggcttgcacagccgtcagtattcaaggattgttgtgttt
agtaaggttccattgcctaattatagatcagatcttgatgacaaaagacctcagagagag
gtatctatacctgctggcttgcaaagagaagttgatgcattgcttgcaggctatcttgca
cgaaagagaatgaacagtgggacctttccaaatgcagccttctcaaggtcaagcagcagt
gaaagttttgcaaccgatgaaggcttctttgagcagcaagacaatcagacttcaactagt
gctgttatggagagaattcaaagaaggaaaagcctacagttacgcaatcagcaggctgct
tggcaggaatcaaatgaaggtcaaagcatgatggagtttcgccgcagccttccttcttat
aaagaaagacaaacattattggaagctatatctcagaaacaggttgttgtagtttcaggt
gaaacaggctgtggcaagacaacacagctaccacaatacattttagaatctgaaatagat
gctgctcgtggtgctagttgcagtattatttgcactcaaccaagacgaatatcagctatc
tctgtttctgaaagagttgctgctgaaagaggtgaaaaaattggtgaatcggttgggtac
aaagttcgattggaagggatgaaaggaagggatacacgccttcttttctgcaccactggg
gtcctgttgcggagattacttgtggacagaagcttgaaaggtgttacccatgttatcgtt
gatgaaatccatgagcggggcatgaatgaagattttctgcttattgttctaaaggatctt
cttccacgccgtcctgagctaaggcttatattgatgagtgcaactcttaatgccgagctg
ttctcttcatactttggtggagcacccatgatacatatacctggttttacatatcctgtc
cggactcaatttctagaagatatccttgaatctactggacaccgattgactccgtacaac
caaattgatgactatggtcaagaaaaaagttggaagatgcaaaaacaagctctaaggaag
aggaagagtcaaattgcttctgtcgtggaagaggcagttgaagctgctgatttgaggaac
tatagttcacgaactcgtgactcgctatcctgttggaatcctgattcaattggttttaat
ttaatagaaaatgtattatgccatatttgtcaaaaggaaagacctggtgctgttcttgta
tttatgactgggtgggatgacattaatgcactaaaagagcagctgcaagcaaacccattg
cttggagatcctagcaaagttttgctgctcgcttgtcatggttcaatggctagctcagag
cagaaactaatatttgagaagcctgaacctggagtaaggaaaatagttcttgccaccaat
ttggccgaaaccagtattactatcaatgatgtagtttttgttgttgactgtggaaaagca
aaagagacttcttatgatgcactgaataatactccctgcttgcttccaacctggatctcc
aaggcttcggccagacaaagacggggaagagctggccgagtccaaccaggggagtgttac
catctttacccacgatgtgtatatgatgcatttgctgactaccagttaccagaacttctg
agaacccctctccaatccctctgtttgcaaataaaaagcctgaggctgggaagtatatcc
gaatttttatccagagctttgcaatcaccagagtctctatcggtacaaaatgccattgaa
tatctcaaagtcattggagcatttgatcaaaatgaagagttgacaattctaggaaagcat
ttgtctatgcttccagttgagcctaagttaggcaagatgcttatttttggggctattttt
aattgtttggatcccatattaaccattgtttctggacttagtgtgagagatccatttttg
accccattcgacaagaaggatcttgcagaatctgctaagttacagttttcatgccgggac
tacagcgatcatcttgcacttgttcgtgcatatgagggatggagagaggctgaaagagat
cgtgctggctatgactactgctggaaaaaatttctttccgtgcaaaccttgaaagccata
gattcccttaggaggcagtttctctaccttctgaaggatactggtttggttgatgaaaac
atgactttgtgcaataaatggagtcgtgacgaaaatctagtccgggcagtaatttgtgcc
ggactatatccaggtgtttcgtctgtcgtgaacaaggagaaatcaatttctctcaagaca
atggaagatggacaggtcatgctttattcgagttcagttaatggtaaagaagctaagatt
ccattcccctggctagtgttcaatgagaaggtgaaggtgaattctgtttttctccgggat
tcaactgctatatctgattctatactgttgctcttcggaggcaacatacaacaagggggc
ttggacggacacttgaaaatgcttggaggttatctggagttcttcatgaattgtgatctc
gcattgacttacttgagcctcaagaatgaacttgagaatttaatccattgcaagctccaa
aacccaaggatggacattcaaaccagtgaagagttgttatcagccatccgtttgctggtc
acagaggacccatgcaatggtcgctttgtctacggccgacaggagccaagatccaagaaa
gcaaagacgatgctctcatcagcctccatgagcagcggcggtgggaacggaggggacaac
cccaagaaccatctccagaccctcctaacccgggccggccacaacaatccgtcctacacg
acgaagcaaatcaagaacagcctcttcaggtccacggttgagttcaacggcatgcagttc
gttggccagccatgcgcgaacaagaagctcgcggagaaggacgcagcgggagaggcgttg
aactggctcacgagagatggcggaggagcgcccaccgactcgagggacacccgagacgcg
gatcccatgtccatgctgctgaagccaccacgaaggaggcggcatagccatcgtaggagt
tga
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