Phragmites australis (common reed): 133895498
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Entry
133895498 CDS
T10575
Name
(RefSeq) DNA repair protein RAD4 isoform X1
KO
K10838
xeroderma pigmentosum group C-complementing protein
Organism
paua Phragmites australis (common reed)
Pathway
paua03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
133895498
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paua03400
]
133895498
DNA repair and recombination proteins [BR:
paua03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
133895498
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GFIT
Motif
Pfam:
BHD_3
Rad4
BHD_1
BHD_2
Transglut_core
Motif
Other DBs
NCBI-GeneID:
133895498
NCBI-ProteinID:
XP_062191831
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Position
16:20518812..20525177
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AA seq
873 aa
AA seq
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MRRTRSQSAREGKPTPAGPSAEVATAGANRRRASPAAKGKSPAKVEMGSPLRETCKNGRS
KMKSSDGASVKRCSAGSREKNSLEDQTEAIGDTDAAEMDWEEGHVLEHEEGYSHELGETI
TVEFTDVPSSTNKKSARRPTAEEKELAELVHKVHLLCLIARGRVVDKACSDPLIQASMLS
LVPDHLLWNVVDVPKLKAVNLHSLVSWFHRTFCVTAQSTDRGSFKSNLAFALQDRVGTAE
EVCALSVALFRALNLTARFVTNLDVAGLKPDTKVMGTFNQDAARLCTRALPSSSPVADCN
VVSSTPLLQGNTEDSVGMTEQRGNLGKSKRTSACQRSLCKSLSSVKADHGSTCASASEHK
STSSQFPYTSNNAEVPKRIGDVEFELQLEMALSATATETKNNKLATHVSQSTGSLHNSIP
PLKKLRKNAEASNSSSAVWSRNGAPLYWAEIYCGGQASTGSWVHVDVVNDLIDGERNVEA
SSAVCKKPLRYVVAFAGNGAKDVTRRYCLQWHRIVQGRVNQQWWDDVLAPLMQMELAATN
DSEDMELQTRDLTEPLPTSQQAYKDHHLYALEKWLHKNQVLHPKDPVLGFCKGHPVYPRS
CVQTLQSRHGWLREGLQVRENELPAKVVTRPKRTFNAQSLQSSANEDDLKPTLELYGEWQ
LEPLQLPHAVNGIVPKNERGQVDVWSEKCLPPGTVHLRLPRLFQVTKRLGIDYAPAMVGF
DYRSGRCLPIFDGIVVCTEFKSTILEAYAEEEEQRQAEERKQEEAQALSRWYQLLCSIVT
RQRLNDSYKTPSQGLAREGSPKNANTQKNALSSQRSETETRTGKPQTDQVPNPCLYAPGH
EHEFPEEDQIFDEETFVRTKRCPCGFSMQVEEL
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atgaggcggaccaggagccagtccgcccgcgagggcaaacccacgccggccggaccaagc
gcagaggttgcgactgccggggcgaatcgccggagggcttcgccagccgcgaaagggaaa
tcgcctgccaaggtggaaatgggatcaccattgagggaaacatgcaaaaatggtagatca
aagatgaagtcgagtgatggtgccagtgtgaaaaggtgcagtgctgggagtcgtgaaaag
aatagtttggaagaccaaacagaggcaattggtgacactgatgcagctgaaatggactgg
gaagagggacatgtcttggaacacgaggagggttattcccacgagcttggagagacgatc
actgttgagttcactgatgtaccttcttccactaacaagaagagtgctcggcggcctact
gctgaagaaaaggagttggctgaacttgtgcacaaggtccatttgctttgcctaattgca
aggggtagggtagttgacaaggcttgcagcgatcctcttattcaggcgtcaatgctctct
cttgtaccggaccacttactatggaatgttgtagatgttccaaaactgaaagccgttaac
ttacatagtcttgtgagctggttccatcgtactttctgtgtaaccgcacaatccactgac
aggggatcttttaaatcaaatttggctttcgctcttcaagaccgcgtaggtactgctgaa
gaggtttgtgcactttcagtggcattgttcagggcactcaacttaacagctaggtttgtt
acgaatctggatgttgctggactcaagcccgataccaaagtgatgggaacattcaaccaa
gatgcagctaggctttgtacaagggcattaccatctagttctccagtcgctgactgcaat
gtggttagttctacacctctactacaaggtaatactgaagatagtgtcggcatgactgaa
caaagaggtaatctgggaaaatcgaaacgaacctcagcatgccaaagaagtttatgtaaa
agtttgtcaagcgtaaaagcagatcatggaagtacttgtgcttcagcatcagaacacaaa
tcaacgagcagccaatttccttacacttccaataatgctgaagtaccaaaaagaataggg
gatgtggaatttgagttgcaactggaaatggctctttcagctactgctaccgagactaaa
aataataaactagctactcatgtgagtcagtccaccggtagcttacacaattctattcca
ccattgaagaaattgcgtaaaaatgcagaagcttcaaacagctcaagtgcagtttggtca
agaaatggagctccgttatattgggctgagatatactgcggtgggcaagcatcaacagga
agctgggtgcatgttgatgttgtaaatgatctcattgatggtgaacgaaatgtagaagct
tcttctgctgtttgcaagaagcctttaagatatgttgttgcttttgctggaaatggagcc
aaggatgtaacaagaaggtattgtttgcagtggcacagaattgtacaggggagagtgaat
cagcagtggtgggatgatgttttggcaccactaatgcagatggaattggccgcaacaaac
gattctgaagacatggaacttcaaacaagagacctaacagagccccttcctaccagtcaa
caggcctacaaagaccatcacctatatgctcttgagaagtggcttcacaagaaccaagtt
ctgcaccccaaagatccagttcttggcttctgtaaagggcatcctgtttatcctagatct
tgtgttcaaacactgcaatcaagacatggatggttgcgggagggcctgcaagtcagagaa
aacgagttgcctgcaaaggttgtgacacgcccaaagaggacttttaatgctcagtcactt
caatcaagtgctaatgaagatgatcttaagccaaccttggaactatacggtgaatggcaa
ctggaaccgctgcaacttcctcatgctgtaaatggcattgtgccaaagaatgaacgggga
caagttgacgtatggtcagagaagtgccttccacctggaacagtacacttgaggttacca
agattattccaggtcacaaagagacttggcatcgattatgctcctgccatggttggattc
gattatcgaagtggtcggtgccttccaatttttgatggaattgttgtctgtacagaattc
aaaagtactatccttgaggcatatgcagaagaagaggaacagagacaggcagaggagagg
aagcaggaggaagctcaggcactttccaggtggtaccagttgctctgttccattgtaaca
agacagcggttgaatgactcctacaaaacaccttcacaagggcttgctcgggaaggatca
cccaaaaatgctaacacccagaaaaacgccctcagcagtcaacgctcggaaacagagact
cgtacaggcaaaccacagacagatcaggtgccgaatccttgtctttatgctcctggccat
gagcatgagtttccggaggaagaccagatctttgacgaggagacatttgtgcgaacaaaa
cgctgtccttgtggtttttctatgcaagtagaggagttgtaa
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