Phragmites australis (common reed): 133895559
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Entry
133895559 CDS
T10575
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42-like
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
paua Phragmites australis (common reed)
Pathway
paua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133895559
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
paua03041
]
133895559
Enzymes [BR:
paua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133895559
Spliceosome [BR:
paua03041
]
Complex A
U2 snRNP components
U2 related factors
133895559
Complex B
133895559
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
FeoA
Tet_JBP
Motif
Other DBs
NCBI-GeneID:
133895559
NCBI-ProteinID:
XP_062191954
LinkDB
All DBs
Position
16:complement(3937749..3943109)
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AA seq
1072 aa
AA seq
DB search
MGSGDDERTTTASMHHHRDKDKDRDRSSSRRNRNKDRERSSSRHHRDDRDGDRDRRHREK
DRDREERKDREERKEREEREERKGREREEREREKEKEKEREREKEKEKERAREEREREKE
RERARRREERDREERERSRRREADGEEDEDHDHKRRRRSSHHHRDAEAEAPREEVDDEEA
ERRRQRKKEGMEAEQQRLDDEMERRRRRVKEWQEKRREQQQDDDAGGASVASVAQADGKE
GKKWTLDGEESDEEVDKEDGKKLEENGGTGDMDVDLPNGVSDANGGAGMEEDEIDPLDAF
MNTMVLPEVAKLGSAAVAMDSVSAAGADDKNDKSAKDVVSNGDKKGPRRVMGRIMQGDDS
DSDYDDADDDGAGVEDEEDEEFIKRVKKTKAEKLAVVDHSKIDYEPFRKNFYIEVKDVTK
MTSEEVAAYRKQLELKVHGKDVPKPIKAWVQSGLTSKLLDTIKKLGFEKPMPIQAQALPV
IMSGRDCIGIAKTGSGKTLAFVLPMLRHVKDQLPVVPGDGPIGLIMAPTRELVVQIHSDI
KKFSKVLGINCVAIYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVTF
LVMDEADRMFDMGFEPQITRIVQNTRPDRQTVLFSATFPRQVEILARKVLTKPVEIQVGG
RSVVNKDIAQLVEVRPESERFFRLLELLGDWFVKGKILVFVHSQDKCDSLLKDLFQHGYP
CLSLHGGKDQTDRESTIVDFKSNVCSLLIATSVAARGLDVKELELVVNYDVPNHYEDYVH
RVGRTGRAGRKGFAVTFISEEEERYAPDLVKALELSEQAVPEDLKALADRFMAKVKQGTE
QAHGTGYGGSGFKFNEEEDEARKTAKKAQAREYGYAEDKSDSDSDEEGGVRKAGGDLAAQ
AIANAQAAAALVANKAASNANQQIPGSAAVPLIPILAAPNQQNDEATARALQAALNLQQN
LARIQAHAVPEHYEAELEINDFPQNARWKITHKETLAPIQDWTGAAVTTRGTYIPQGKIV
GANERKLYLFIEGPTESSVKKAKAELKRVLEDCANQALNLPGSAQTGKYSVI
NT seq
3219 nt
NT seq
+upstream
nt +downstream
nt
atgggctccggcgacgatgagcgaaccaccaccgcctctatgcaccaccaccgcgacaag
gacaaggaccgagaccgctcatcctcccgccgcaaccgcaacaaggaccgagagcgctcc
tcctctcgccaccaccgcgacgacagggacggcgaccgggaccgccgccacagggagaag
gaccgggatcgcgaggagaggaaggatcgggaggagaggaaggagcgggaggagcgggag
gagaggaaggggcgggagcgggaggagcgggagagggagaaggagaaagagaaggagcgg
gagagggagaaggagaaagagaaggagcgggcgcgggaggagcgggagcgggagaaggag
cgggagcgggcgcggcggcgcgaggagagggaccgcgaggagcgggagaggtcgaggcgg
cgggaggcggacggcgaggaggacgaggaccacgaccacaagcgccgccgccggtcctcg
caccaccaccgggacgcggaggcggaggcgcccagggaggaggtggacgatgaggaggcg
gagaggcggcggcagcggaagaaggagggcatggaggccgagcagcagcgccttgatgac
gagatggagcggcggcggcgccgcgtcaaggagtggcaggagaagcgccgcgagcagcag
caggacgatgacgccggtggtgcttctgttgcttctgtggctcaggctgatggcaaggaa
gggaagaagtggaccttggatggcgaggagtctgatgaggaggtggataaggaggatggc
aagaagttagaggagaatggtggcactggtgacatggatgttgatttgccaaatggggtt
agcgatgccaatggtggtgctggtatggaggaggacgagattgatccgctcgatgcgttc
atgaacaccatggtgttgccggaggttgcgaagctggggagtgctgcggtagcaatggac
agcgtgtctgctgccggtgcggatgacaagaatgataagagcgcaaaggatgttgttagt
aatggagataagaaagggccaaggagggtgatggggagaattatgcaaggggatgactcg
gactcggattatgatgatgctgatgatgatggggctggagtggaggatgaggaagacgag
gagttcataaagcgcgtcaagaagacaaaggctgagaagctggcagttgttgaccattcg
aagattgactacgaaccgttccggaagaatttctatattgaggtgaaggatgttacgaag
atgacatctgaggaagtggcagcctataggaagcagttggagctcaaggtgcatgggaaa
gacgtgcccaagccaataaaggcatgggtacagagtgggctgacaagcaagctccttgac
accatcaagaagcttggttttgagaaaccgatgcctatacaggcacaagcgttgccggtc
ataatgagtggacgtgattgtattggaattgcaaagactggatctggcaagactctagcg
tttgtccttccgatgctgaggcatgtcaaagaccagctgcctgttgttcctggagatggt
cctattgggcttattatggctcctaccagagaacttgtggtgcagatacattcagacatt
aagaagttctctaaggtgcttggcatcaactgtgttgctatctatggaggttctggggtt
gcgcagcagattagcgaactgaagaggggggctgaaattgtcgtttgtacaccgggcagg
atgatcgatatcctttgcactagcagcggaaaaattactaaccttcggagagtgacgttc
ttggttatggatgaagctgataggatgtttgacatgggttttgaacctcagattactcgg
atagttcagaacacacggccagataggcagacagtacttttctctgccacttttccacgg
caggtggagatactggcacgtaaggtgctgactaagcccgtcgagattcaggtgggtggg
aggagtgtcgtgaacaaagatattgcacaattggttgaggtgcgaccagaaagtgagagg
ttcttcaggctgttagagttgcttggtgattggtttgttaaggggaaaattcttgttttt
gtccactcgcaagataaatgtgattctctactcaaagacttgttccagcatggatatcca
tgcctgtctctacatggtggtaaagatcagactgaccgtgaatcaactattgttgatttc
aagagcaatgtctgcagcttgctgatcgcgactagtgttgctgctaggggtttagatgtg
aaggaacttgagctggttgtcaattatgatgtccctaaccattatgaggattatgttcat
cgtgttgggcgaacgggtcgtgctggtagaaagggctttgctgtgacttttatttctgag
gaagaggagcggtatgcaccagaccttgttaaggctctggagctctctgaacaagctgtc
ccagaggacttgaaagccctagccgatcggtttatggcaaaggtgaagcagggaacagag
caggcccatggtacaggttatggtggtagtggtttcaagttcaacgaggaagaggatgaa
gcacgaaaaaccgcaaagaaggctcaggcaagggaatatggatatgcggaggacaaatca
gattcagattctgatgaggaagggggggtgcgtaaagcgggaggtgacttggcagcacaa
gctattgccaatgctcaagcagctgctgctttggttgcaaacaaggctgctagtaatgct
aatcagcaaataccaggatctgcggcagtccccttgattcctatactcgctgcacctaac
caacaaaacgacgaggccacagctcgtgcacttcaggctgcactgaacttacagcaaaat
cttgcaaggatacaggcccatgcagtaccagaacactatgaggctgaacttgagattaat
gatttcccacagaacgctcgctggaagatcactcacaaagagacattggctcctattcag
gattggactggagctgctgtcactacaaggggaacatatattcctcaaggaaaaattgtt
ggtgcgaatgagcgcaagctgtacctgtttattgagggtccgactgagtcgtctgtgaag
aaggcgaaagcagaattaaaacgtgtccttgaggattgtgccaaccaggctctgaatctt
cctggatcagctcaaacaggaaagtattctgttatttga
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