Phragmites australis (common reed): 133895775
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Entry
133895775 CDS
T10575
Name
(RefSeq) rhamnogalacturonate lyase B-like isoform X1
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
paua Phragmites australis (common reed)
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
133895775
Enzymes [BR:
paua01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
133895775
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Gene cluster
GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
Motif
Other DBs
NCBI-GeneID:
133895775
NCBI-ProteinID:
XP_062192261
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Position
16:29250135..29256871
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AA seq
682 aa
AA seq
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MGPPRAAGVDATAGVKVKVSDRYVEINNGIFELTLSNPDGSVTGVRYNGVDNLMEIGNKE
DNRGYWDIVWNPPGERTGIFDVIKGTEFRIIYHDESQAEVSFTRTWDPSLEGKAVPLNID
KRFIILRGSSGFYTYGIYEHKEGWPDFGLEETRVAFKLRKDKFHYMALADNRQRIMPMPD
DRLPPRGQQLAYPEAVLLVDPINPDLRGEVDDKYQYSCEDQYNNVHGWVSFDPPIGFWQI
TPSDESRTGGPLKQNLTSHVGPTMLAMFLSAHYAGGDLSPKFTDGEYWKKVHGPVFMYLN
SSWDGSDPTMLWEDAKVQMMIEKESWPYVFALSEDFQKTEQRGCVSGRLLVRDRYIDDQD
LYASGAYVGLALPGEAGSWQRECKGYQFWCRADVDGSFYIRNIVTGNYNLYAWVPGFIGD
YKLDATLTIASGDDIYLGDLVYEPPRDGPTIWEIGVPDRSAAEFYVPDPNPNYVNRLYID
HPDRFRQYGLWERYAELYPDGDLVYTIDQSDYSTDWFYAQVNRRTDQNTYQPTTWQIKFN
LDSVSPNSTYKFRVALASSTLAELQVLSKERKKDLAFSYLHPSFFLSNVITGNSSCMINV
LAQVFFNDQDKGVPHFTTGLIGRDNAIARHGIHGLYWLFNIDVGSAWLVQGLNTIYLKQA
RSTSPFQGLMYDYLRLEGPCGC
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgggacctccgcgggcggccggcgttgatgccaccgccggcgtcaaggtcaaggtcagc
gaccgatatgttgagataaacaatggcatcttcgagctgacgctgtcgaatccggacggg
agtgtgaccggcgtgcggtacaacggtgtggataatctcatggagataggaaacaaggaa
gacaacagagggtattgggacatcgtttggaatccaccgggagagagaactggaatcttt
gatgtgatcaaaggcacagagttccgcatcatataccacgacgaaagccaggctgaggtc
tccttcacaagaacatgggatccttcccttgaaggcaaagctgtccccttgaacattgat
aagaggttcatcatcctccggggttcctcaggattctacacctacggaatctatgagcat
aaagaagggtggcctgattttgggctggaagagacaagggtggctttcaagcttcggaaa
gacaagttccactacatggcactggctgacaacaggcagagaattatgccgatgcctgat
gaccgattgccgccccgaggccagcaattagcataccctgaggctgtcctccttgtggat
ccaatcaatcctgacctcagaggggaggtcgacgacaaataccagtactcgtgcgaagac
cagtacaacaatgtccatggatgggtatcgtttgatcctccaatcggcttttggcagata
actccgagcgacgagtcccgaacaggaggacccctgaagcagaatttgacctctcatgtt
ggccccactatgctagctatgtttcttagtgcacattatgccgggggtgacctttcgccc
aagttcacggatggagaatattggaaaaaagtccacggaccggtcttcatgtatcttaat
tccagttgggacggaagtgacccaactatgctatgggaggatgcaaaagttcagatgatg
attgagaaagaaagctggccatatgtttttgcactttcagaggattttcagaagactgag
caaagaggttgcgtctctggcagattactagttcgagacaggtatatagatgatcaggac
ctttatgcctcaggagcctatgtaggcttggccctaccaggagaagctggatcctggcaa
agagagtgcaagggataccaattctggtgtagagcagatgtagatgggagcttctacatc
aggaacatcgtaactgggaactacaacctgtatgcgtgggttccgggttttataggggac
tacaaattagatgctacactaaccatagcttcaggggatgatatttatcttggtgacctt
gtttatgaaccgccaagagacggtccgacaatttgggagattggagtacctgaccgctcc
gctgctgagttttatgttccagaccctaaccccaactatgtcaatagattgtacatcgac
catcctgatagatttaggcaatatggactttgggaacgatatgcagaactatacccagac
ggtgatctggtatacacgatcgaccaaagcgactatagcactgattggttctatgctcaa
gtaaacagaagaactgatcaaaacacttaccaaccaaccacatggcagatcaagttcaat
cttgacagtgtcagtcctaatagcacctacaagttcagagtggcactcgcgtcttctacg
cttgccgagttacaggttctttcgaaagaaagaaaaaaagatcttgccttttcctatctg
catcccagttttttcttgtcaaatgtcatcactggaaatagctcctgcatgatcaatgtt
cttgcgcaggttttcttcaacgatcaggacaagggtgttcctcacttcaccaccgggctg
atcggcagggacaacgcgatagcgaggcacgggatccatgggctctactggctgttcaac
attgatgtgggtagtgcctggcttgtccaaggtctgaacaccatctacctgaagcaggcc
aggagcacgagcccgtttcaggggttgatgtatgactacttgcgtttggagggaccgtgt
ggctgctaa
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