Phragmites australis (common reed): 133895801
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Entry
133895801 CDS
T10575
Name
(RefSeq) sm-like protein LSM2
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
paua Phragmites australis (common reed)
Pathway
paua03018
RNA degradation
paua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133895801
09123 Folding, sorting and degradation
03018 RNA degradation
133895801
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133895801
03041 Spliceosome [BR:
paua03041
]
133895801
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133895801
mRNA degradation factors
5'-3' decay
Lsm complex
133895801
Spliceosome [BR:
paua03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
133895801
Complex C
U2 snRNP components
133895801
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
LSM14
DUF1256
DUF150_C
Motif
Other DBs
NCBI-GeneID:
133895801
NCBI-ProteinID:
XP_062192301
LinkDB
All DBs
Position
16:3263197..3267299
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AA seq
93 aa
AA seq
DB search
MLFFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
FIRGSVVRYVLLPQDGVDTDILHDATRREARGG
NT seq
282 nt
NT seq
+upstream
nt +downstream
nt
atgttgttcttctcctacttcaaggagctcgtggggaaggaggtgacggtggagcttaag
aacgatctggcgatccgcgggacactccactcggttgaccagtacctcaatatcaagctt
gagaacactcgcgtcgtcgaccaggacaagtatccccacatgctatcggtgcgcaactgc
ttcatcaggggttcagtggtgcggtacgtgctgctcccgcaggacggcgtcgacaccgac
atcctccatgacgccaccaggagggaggcgcgcggaggctga
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