KEGG   Phragmites australis (common reed): 133895801
Entry
133895801         CDS       T10575                                 
Name
(RefSeq) sm-like protein LSM2
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
paua  Phragmites australis (common reed)
Pathway
paua03018  RNA degradation
paua03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:paua00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    133895801
  09123 Folding, sorting and degradation
   03018 RNA degradation
    133895801
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:paua03019]
    133895801
   03041 Spliceosome [BR:paua03041]
    133895801
Messenger RNA biogenesis [BR:paua03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     133895801
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     133895801
Spliceosome [BR:paua03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    133895801
 Complex C
  U2 snRNP components
    133895801
SSDB
Motif
Pfam: LSM SM-ATX LSM14 DUF1256 DUF150_C
Other DBs
NCBI-GeneID: 133895801
NCBI-ProteinID: XP_062192301
LinkDB
Position
16:3263197..3267299
AA seq 93 aa
MLFFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
FIRGSVVRYVLLPQDGVDTDILHDATRREARGG
NT seq 282 nt   +upstreamnt  +downstreamnt
atgttgttcttctcctacttcaaggagctcgtggggaaggaggtgacggtggagcttaag
aacgatctggcgatccgcgggacactccactcggttgaccagtacctcaatatcaagctt
gagaacactcgcgtcgtcgaccaggacaagtatccccacatgctatcggtgcgcaactgc
ttcatcaggggttcagtggtgcggtacgtgctgctcccgcaggacggcgtcgacaccgac
atcctccatgacgccaccaggagggaggcgcgcggaggctga

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