Phragmites australis (common reed): 133896108
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Entry
133896108 CDS
T10575
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
paua Phragmites australis (common reed)
Pathway
paua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133896108
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133896108
Enzymes [BR:
paua01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
133896108
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
133896108
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
133896108
NCBI-ProteinID:
XP_062192607
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All DBs
Position
16:complement(21201411..21206707)
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AA seq
596 aa
AA seq
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MATSRAAAASAKQVTRRNFAEAVRELGSHLEACEYVAVAAQKTGAATGWRRALPVDTAET
AYLKAKLAAESFQPLQIAICPFQLHTSPYTLVAYPYNFHLFPRDELQLGMPSYSFSCQSS
YLSTMANDGFDFNMCIYDGISYLSRVQESLARQNIFTPQLRQLLPSPSTSVADSVFMSRI
KSRIVHWRKGYAEPSKTAEGSLVSSLSKLILGGESYGSRPSMIIDVCSDRQVQLVLEAVN
RISDDLVPLVVPDKAGAARAVRLVFTSSKEDKNLLLMDMQKLEDEQNFRFRGFREVIDLL
SSSQKPIISYNCLNDLTMMHTKFVAPLPSNVHEFMCSLRMVFPSVVDISHMWKEIGPLRK
AKNIQAALSYLQRQYFVPMEIEVPQQDGTNSATKNEQNVLRITKLFAKLSSLLKISPKGQ
SQSDEQCCTVEEYCNIFYPCTVEESDDVDFANESDTTKTVSTDNVVFLWGFREKSCKELR
SHLTGLHHAFSEDFEVKLLDKTCSALIFRSSDTAMELLQEISSESPSLNNFLSEGLKAAG
FEVYRKACRSGLWDSDLAEALEGVSSELAASTLSEYSTSQIYWNNSLMLDLKEYLD
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atggctacctcgcgcgccgccgccgcgtcggcgaagcaggtgacgaggcggaactttgcg
gaggccgtgcgggagctggggtcccacctggaggcgtgcgagtacgtggccgtggcggcg
cagaagacgggcgccgccacggggtggcgccgcgcgctgcctgtggacaccgcggagacg
gcgtacctgaaggccaagctcgccgctgagtctttccagcccctccaaatcgccatctgc
cccttccagctgcacacctccccctataccctcgtcgcctacccgtacaattttcattta
tttcctagagatgagctacagctaggaatgccttcttacagtttctcctgtcaatcatct
tatttgtcaactatggctaatgatgggtttgatttcaatatgtgcatttacgatggtata
tcttatctatcaagggttcaagaatccttggcaaggcagaatatctttacccctcaactt
cgccaactgttaccctcaccaagcacatcggttgctgattcagtttttatgagtagaata
aagtcaaggatagtgcattggcgaaaaggatacgcagaaccaagtaaaacagctgaaggt
tctttagttagttcccttagtaaactaattttgggtggtgaatcatatggttcaaggccc
agcatgatcattgatgtctgcagtgatcgccaagttcaactggtcttggaggcagtgaat
cgtatctctgatgaccttgttcctcttgttgttccggacaaagctggagctgctagggct
gtccgtttggtctttactagttctaaagaggataagaatcttctcctgatggatatgcaa
aaattagaagatgaacaaaattttagattccgtggatttcgagaagttattgatctacta
tcatcttcacagaaaccaatcatatcttacaactgcttgaatgatctgacaatgatgcac
accaaatttgtggcacctcttccatcaaacgtgcatgaatttatgtgttctttgaggatg
gtattccctagtgttgttgatatcagccacatgtggaaggaaattggccctttgagaaaa
gcgaagaatatacaagctgctctcagttacttacaaagacagtactttgtaccaatggaa
atagaagtaccacaacaagatggtaccaacagtgcaacaaaaaatgagcaaaatgttttg
agaataacaaaattatttgctaaactaagtagtttacttaaaatcagtcccaagggccag
tcgcaatctgatgagcagtgctgcacagttgaagagtattgtaacatcttttatccctgt
acagtagaagaatctgatgatgtggacttcgctaatgagtcagataccacaaagactgtg
agcactgataatgtcgttttcttgtggggctttagggagaaatcttgcaaagagttaaga
tcacaccttacaggcttacatcatgccttctcagaagattttgaggtcaaattgttggat
aagacgtgctcagctttgatattccgtagttctgatactgcaatggagttactacaagaa
ataagctcggaaagtccctcactaaataatttcttatcagaaggtctgaaagctgcaggt
tttgaagtgtatagaaaggcttgcaggtcaggactctgggattcagatctagctgaggcc
ctggagggtgtttcatctgagctagctgcttcaacactttctgagtacagtacctctcag
atatactggaataattctttgatgctggatctgaaggagtacctggactaa
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