Phragmites australis (common reed): 133896109
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Entry
133896109 CDS
T10575
Name
(RefSeq) probable CCR4-associated factor 1 homolog 7
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
paua Phragmites australis (common reed)
Pathway
paua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133896109
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133896109
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133896109
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
133896109
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
133896109
NCBI-ProteinID:
XP_062192608
LinkDB
All DBs
Position
16:complement(21195916..21197213)
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AA seq
284 aa
AA seq
DB search
MATPSPAAESPDGVEIRDVWARNLEEEFAAIREVVDAYPYVAMDTEFPGFVMNPAGKYRF
RDDHNYAILVANVNLLKLIQLGITLSDETGALPPLGTGGRACIWQFNFRGFDPRTDPSDA
NSIDMLRRSGIDFDRFAAEGADATRFAELLMSSGIVLNDGVQWITFHGGHDFGYLLRLLT
GRNMPDTLGGFLELTKVFFPVLYDIKHLMKFCGGLYGGLSKLGELLNVKRVGTSHQAGSD
SLLTLQCFKKLKEVYLKESLETKAGVLFGLIPGDVENKPPTLPK
NT seq
855 nt
NT seq
+upstream
nt +downstream
nt
atggctaccccgtcgcccgccgcagagagccccgacggcgtggagatccgcgacgtctgg
gcgaggaacctggaggaggagttcgccgcgatccgcgaagtcgtcgacgcgtacccgtac
gtcgccatggatacggagttccccggcttcgtgatgaatccggccggcaaataccgcttc
cgcgacgaccacaactacgctatcctcgtggccaacgtcaacttgctcaagctaatccag
ctcggcatcaccctctccgacgagaccggcgcgctgccgccgctgggcacggggggccgg
gcctgcatctggcagttcaacttccggggcttcgacccgcgcaccgacccctccgacgcc
aactccatcgacatgctccgccgcagcgggatcgacttcgaccgtttcgctgccgagggc
gccgacgccacccgctttgccgagttgttgatgtcgtccgggatcgtgctcaacgacggt
gtccagtggattaccttccacggtgggcacgacttcggctacctgctcaggctgctcacc
gggcggaacatgccggacaccttgggtgggttcctggagctcaccaaagtcttcttcccg
gtgctgtacgacatcaagcatctcatgaagttctgcggtggcctatacggcgggctgagc
aagcttggggagctgctcaatgtcaagcgcgttggcaccagccaccaggctggttctgac
tctctgctgaccctgcaatgcttcaagaagcttaaggaggtgtacttaaaagaatcgctg
gagacgaaagctggtgtgttgtttgggcttattccaggggatgtggagaacaaaccacca
actctccccaagtaa
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