Phragmites australis (common reed): 133896313
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Entry
133896313 CDS
T10575
Name
(RefSeq) uncharacterized protein LOC133896313
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
paua Phragmites australis (common reed)
Pathway
paua03015
mRNA surveillance pathway
paua03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133896313
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
133896313
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133896313
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
133896313
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Motif
Other DBs
NCBI-GeneID:
133896313
NCBI-ProteinID:
XP_062192876
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Position
16:complement(25605584..25610160)
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AA seq
602 aa
AA seq
DB search
MDPDGDPAFHRSEAISAVQDVDQYYGEDDDFDELYNDVNVGDGFLRSSHPPPPLPPQKAP
PPPLPPQKAPPPQQHHQPHQQLPPPPQLQSLPPQLQSLPPQQQPPPHSLPPPLPQAPLQQ
KVHVPPVTAPAPSLPPAQPNLPPPPAAPALPPPQHHQIQQGDGFHRPGGNYGGGLVVVGN
GGGDGPGSTTLFVGELHWWTTDADLEAELSKFGPVKEVRFFDEKASGKSKGYCQVDFYDL
GAAAACKEGMNGHPFNGRPCVVAFASPNTVRRMGEAQVKNQQSMAAQTSSMQPKGGRGGG
GAGAPQVGGNYGGGRGGGGGHSGGAGGGGGNWGRGGGGMGGRGPVGNMRRMGPGGGRGIM
GNGNMIAPPPPMLPPGGMLGQGFDPTGYGAMGRMGGGFGGFPGGPGAGPFPGLMQPFPPV
APHVNPAFFGRGGMGAGGVGMWPDPSMGGWGGEEQSSYGDDAASDQQYGEGGSHGKERPL
EREWSGAPERRREREKDVPPVQEWPERRHRDERDMDRERNRDYERERERDRDRERDRDRD
RERDRDREKERHRDDRDRYADYHRHRDRDSERNEDWDRRRSSGIRSRSREVGHSKRRRMT
PE
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atggaccccgacggcgacccggcgttccaccggagcgaggccatctccgccgtccaggac
gtcgaccagtactacggcgaggacgacgacttcgatgagctctacaacgacgtcaacgtc
ggcgatggctttctccgctcctcccacccgccgccgccgctgccaccccagaaggccccg
cctccgccgctgccgccccagaaggccccgcctccgcagcaacaccaccagccgcatcaa
cagctccctcccccgccccagctgcaatcgctgccgccccagctgcaatcgctgccaccg
cagcagcagccaccgccccattccctcccgccgccgctgccgcaggccccgctgcagcag
aaggtccacgtgcctcccgtgaccgcgccggctccgagtctccctcccgcccaaccgaat
ctcccgccgccgccggccgcgcctgcgcttccgccgcctcagcaccaccagatccaacag
ggcgacgggttccatcggccgggagggaactatggcggcggcctcgtcgtggtcggaaac
ggcgggggcgacggccctggcagcacgacgttgttcgtgggcgagcttcactggtggacg
accgatgcggatctggaggcggagctcagcaagtttgggcccgtgaaggaggtgaggttc
ttcgacgagaaggccagcggcaagtccaaggggtactgccaggtcgacttctacgacctt
ggcgctgccgctgcctgcaaggagggcatgaacgggcacccgttcaatggccgtccctgt
gttgtggcattcgcctcgccgaacactgtgcgccgcatgggcgaggcgcaggtgaagaac
cagcagtccatggctgcacagacatcgtcaatgcagccaaagggtggcagagggggcggt
ggtgctggagcgcctcaggtgggtggtaattacggtggtggccgtggtggaggtggtgga
cacagtggtggtgcgggtggaggtggtggaaattgggggagaggtggtggagggatgggg
ggtagaggccctgttggtaatatgaggagaatgggtccgggaggtggccggggaataatg
gggaatggaaacatgattgcaccaccaccaccaatgctgcctccgggtgggatgctgggt
cagggctttgatcccactggttatggcgcaatgggaaggatgggtggtgggtttggcggc
ttccctggcggaccaggcgctgggccattccctgggttgatgcaaccattcccgccggtt
gcgccacatgtaaaccctgctttcttcggacggggcgggatgggggctggtggggtgggt
atgtggcctgatccgagcatggggggttggggtggggaggaacaatcaagttatggggat
gatgccgcatctgatcagcaatatggggaagggggaagccatgggaaggagaggccactg
gagagggagtggtctggtgcaccagagaggaggcgtgagagggagaaggatgtgccccca
gtacaggagtggccagagaggaggcatcgagatgaacgggacatggaccgagagaggaat
cgtgactatgaaagagagagggaaagagatcgtgacagggagagagacagagaccgagac
agagagagggacagggatagagagaaggagaggcacagggatgacagagatcgctatgct
gattatcacaggcacagggatcgcgattcagagcgcaatgaagactgggacaggaggagg
tcatctgggatacgcagcaggtcgagggaggtcggccattctaagcgtaggcggatgaca
cctgagtag
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