KEGG   Phragmites australis (common reed): 133897195
Entry
133897195         CDS       T10575                                 
Name
(RefSeq) THO complex subunit 3-like
  KO
K12880  THO complex subunit 3
Organism
paua  Phragmites australis (common reed)
Pathway
paua03013  Nucleocytoplasmic transport
paua03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:paua00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    133897195
  09122 Translation
   03013 Nucleocytoplasmic transport
    133897195
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:paua03019]
    133897195
   03041 Spliceosome [BR:paua03041]
    133897195
Messenger RNA biogenesis [BR:paua03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     133897195
Spliceosome [BR:paua03041]
 Complex C
  Other components
   EJC/TREX
    133897195
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    133897195
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40_Prp19 WD40_CDC20-Fz Beta-prop_WDR3_1st WD40 WD40_WDHD1_1st Beta-prop_EML_2 ANAPC4_WD40 EIF3I Beta-prop_CAF1B_HIR1 WDR55 WD40_Gbeta Beta-prop_WDR19_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd Beta-prop_RIG_2nd Beta-prop_NOL10_N Beta-prop_WDR36-Utp21_1st Beta-prop_WDR90_POC16_2nd Beta-prop_Aladin DSE1_N WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C Beta-prop_Vps41 Beta-prop_EIPR1 Beta-prop_HPS5 Beta-prop_WDR75_1st Beta-prop_WDR35_TULP_N eIF2A Beta-prop_IFT140_1st Tricorn_2nd Beta-prop_DCAF12 CFAP251_N WD_LRWD1 Beta-prop_ACSF4 Connectase_N
Other DBs
NCBI-GeneID: 133897195
NCBI-ProteinID: XP_062193814
LinkDB
Position
17:12123499..12131023
AA seq 336 aa
MEGKEEERKGSGGAGATPATAGASTPGMNLRNLVSREYYGHKKKVHSVAWNCLGTKLASG
SIDHTARVWSIDPHGHPKVKDIELKGHTDSVDQLCWDPKHPDTVATAAADKSIRLWDTRS
GKYRVVELSGENINITYKHDGTAIAVGNKEDQLTILDVRMLKATGTHKFNYEINEIAWNK
TGDLFFITTGLGHVEVVKDLDFQKSYKLNAHTAGCYCIAMDPLDRYFAVGSADSLVSLWN
VKELLCIKTFSKLEWPVRTVSFNHTGEFIAYASEDPFIDIANVETGRSIHHIPCKAAMNS
VEWNPKYDLLAYAGDDKNKYLADEGVFRIFGFETHN
NT seq 1011 nt   +upstreamnt  +downstreamnt
atggagggcaaagaagaggagaggaagggcagcggaggtgccggcgcaaccccagccacc
gccggcgcctcgaccccggggatgaacctaaggaacctagtgtcgagggaatactacggc
cacaagaagaaggtgcactcggtagcatggaactgcctaggtacaaagcttgcttcagga
tctatcgatcatactgcacgtgtctggagcattgatccccatggccatcccaaggttaaa
gatattgaactgaaaggccacacagatagtgtagatcagctatgctgggatccaaagcat
cctgatacagttgctactgcagctgctgacaagtcaattcgcctttgggacactcgaagt
ggaaaatatcgagttgttgaacttagtggagaaaacattaacatcacatataaacatgat
ggcactgcgatagctgttggaaacaaggaggatcagctgacgatattggatgttcggatg
ctaaaagctactgggacacacaagtttaattatgagatcaatgagatagcatggaataaa
actggggatctattcttcatcactactgggctaggacacgttgaggtggttaaggatctc
gactttcaaaagtcctacaaattgaatgctcatacagcagggtgctattgcattgcaatg
gatccccttgataggtatttcgctgttggaagtgcagattcacttgtcagtctttggaat
gtcaaagagttgctatgcattaaaaccttctcaaaacttgagtggcctgtaagaacagtt
agcttcaatcatactggagaatttattgcatatgccagtgaagatcctttcattgacatt
gccaatgttgagactggacgatcaattcatcatattccatgtaaagcagctatgaatagt
gttgaatggaaccctaagtacgacctcctggcctatgcaggagacgacaagaacaagtac
ctggctgatgaaggtgttttccggatatttggctttgaaacacataactga

DBGET integrated database retrieval system