Phragmites australis (common reed): 133897293
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Entry
133897293 CDS
T10575
Name
(RefSeq) WD-40 repeat-containing protein MSI3-like isoform X1
KO
K10752
histone-binding protein RBBP4
Organism
paua Phragmites australis (common reed)
Pathway
paua03082
ATP-dependent chromatin remodeling
paua03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
133897293
03083 Polycomb repressive complex
133897293
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
paua03036
]
133897293
Chromosome and associated proteins [BR:
paua03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
133897293
Histone modification proteins
HAT complexes
HATB complex
133897293
HDAC complexes
Sin3A-HDAC complex
133897293
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
133897293
PRC2.2
133897293
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
133897293
Heterochromatin formation proteins
Other heterochromatin formation proteins
133897293
Chromatin remodeling factors
NuRD complex
133897293
NuRF complex
133897293
NuRF complex (fruit fly)
133897293
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
CAF1C_H4-bd
Beta-prop_EIPR1
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WDR55
EIF3I
WD_LRWD1
Beta-prop_WDR75_1st
WD40_RFWD3
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_WDR19_1st
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_SCAP
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_1st
Beta-prop_WDR35_TULP_N
Beta-prop_RIG_1st
Beta-prop_IFT140_1st
Beta-prop_DCAF12
Motif
Other DBs
NCBI-GeneID:
133897293
NCBI-ProteinID:
XP_062193943
LinkDB
All DBs
Position
17:complement(27521951..27530775)
Genome browser
AA seq
396 aa
AA seq
DB search
MAGGSSSPASPPPPAASAEEMEEYQNWKKNAAVLYDLVISHPLEWPSLTVQWLPSESPGR
SHRLVVGTHTSDESPNHLMLLDAVLPLPPRLAAAAAAAGGAVPAPSVSVSRVAPHRGEVN
RARCMPQRPYRVATKTCVDEVHVYHLGDGDSGEKSGSDLVLRGHEAEGYGLAWSPMKEGW
LLSGSYDKKVCLWDLGAGSGAPVLDAQQVFEAHEDFVEDVAWHVKDGNIFGSVGDDCKLM
MWDLRTNKPEQSIAAHQKEVNSLSFNPFNEWILATASGDATIKLFDLRILSRSLHTFDSH
EGEVFQVEWNPNLATVLASSAADKRVMIWDVNRIGDEQSEEDANDGPPELLFVHGGHTAK
ISELSWNPSEKWVLASVAEDNILQIWEMAESIYGDD
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atggccggcggctcctcctcgccagcgagccctccaccgccggctgcgtctgcagaggag
atggaggagtaccagaactggaagaagaacgcggcggtgctctacgacctcgtcatctcc
cacccgctcgagtggccgtcgctcaccgtccagtggctcccctccgaatccccaggccgc
agccaccgactcgtcgtgggcacccacacctccgatgagtcccccaaccacctcatgctc
ttggatgcggtcctcccgctcccgccccgcctcgcagcggccgccgcagccgcaggcggc
gccgttccggccccgtccgtgtccgtctcccgcgtggcgccgcaccggggcgaggtcaac
cgcgcgcggtgcatgccgcagcggccttatagggtggccaccaagacttgcgtggacgag
gtgcacgtgtaccatctcggcgacggcgacagcggcgagaagagcggctccgatctcgtt
ctcaggggtcatgaggcggaggggtatggattggcgtggagcccgatgaaggaggggtgg
ttgctgagtggctcgtatgataagaaggtttgcctatgggatcttggcgctgggagtgga
gctcctgttctggatgcgcaacaggtgtttgaggctcatgaggattttgttgaagatgtt
gcttggcatgtgaaagatggaaatatatttggatctgttggggatgactgcaagttgatg
atgtgggacttgcgtacgaataaaccagaacaatctatcgctgcacaccaaaaggaggtc
aactctttgtcattcaatccatttaatgaatggatcttggctacagcatctggtgatgct
actattaaactatttgacttgcgaatattatcaagaagcttgcacactttcgacagccat
gagggggaggtgtttcaggttgagtggaatccaaatttggctactgtattagcttcatct
gccgcagacaaaagagtgatgatatgggatgttaataggattggagatgagcagtcagag
gaagatgcaaatgacgggccaccggagctgctgttcgttcatggaggccacacagccaag
atatcagagctgtcgtggaatcctagtgagaaatgggtccttgccagcgtggctgaagat
aacatcctgcagatctgggaaatggcagaaagcatctacggtgatgactaa
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