Phragmites australis (common reed): 133897753
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Entry
133897753 CDS
T10575
Name
(RefSeq) probable small nuclear ribonucleoprotein F isoform X1
KO
K11098
small nuclear ribonucleoprotein F
Organism
paua Phragmites australis (common reed)
Pathway
paua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133897753
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133897753
03041 Spliceosome [BR:
paua03041
]
133897753
03032 DNA replication proteins [BR:
paua03032
]
133897753
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
133897753
Spliceosome [BR:
paua03041
]
Complex A
U1 snRNP components
Sm proteins
133897753
U2 snRNP components
133897753
Complex B
U1 snRNP components
133897753
U4/U6.U5 tri-snRNP components
133897753
Complex C
U2 snRNP components
133897753
DNA replication proteins [BR:
paua03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
133897753
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
133897753
NCBI-ProteinID:
XP_062194560
LinkDB
All DBs
Position
2:8148011..8151608
Genome browser
AA seq
86 aa
AA seq
DB search
MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFSGNL
GEILIRCNNVLYLRGVPEDTEIEDAE
NT seq
261 nt
NT seq
+upstream
nt +downstream
nt
atggcgactgtgccagttaacccaaaacctttcttgaacaatctgacagggaagcctgta
attgtcaaacttaagtggggtatggagtacaaagggtatctcgtttctgtggactcctat
atgaatcttcagcttgctaacacagaggagtacattgacggacaattctctggaaacctg
ggtgagattctgatcaggtgcaacaacgttctgtatctccgaggtgttccagaggataca
gagatagaggacgcggagtga
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