Phragmites australis (common reed): 133897866
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Entry
133897866 CDS
T10575
Name
(RefSeq) protein argonaute 16
KO
K11593
eukaryotic translation initiation factor 2C
Organism
paua Phragmites australis (common reed)
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133897866
03036 Chromosome and associated proteins [BR:
paua03036
]
133897866
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
133897866
Chromosome and associated proteins [BR:
paua03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
133897866
RNA interference (RNAi) pathway
RITS (RNA-induced transcriptional silencing) complex
133897866
microRNA pathway
RISC loading complex
133897866
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Piwi
ArgoN
PAZ
ArgoL1
ArgoL2
ArgoMid
Motif
Other DBs
NCBI-GeneID:
133897866
NCBI-ProteinID:
XP_062194678
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Position
17:5102223..5111650
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AA seq
883 aa
AA seq
DB search
MAAKTGGAVQVHKDDTVKRTPIARPSVGREGKPIKLLSNHFVVKLRGVDAVFYQYSVSIK
SEDDKVVDGKGIGRKVIDKLLQTYSSELAGKDFAYDGEKCLFTVGPLPQNNFEFTVILEE
TSSRAVGGSPGHGSPSQAVKKRVKQSHLAKKFVVTISYAAKIPLKSVALALRGSESEHAQ
DALRVLDIVLRQQQAKRGCLLVRQSFFSDDSRNLVDLTGGVSGCRGLHSSFRTTIDGLSL
NMDVSTTMIVTPGPVIDFLLTNQNVRDIRDIDWLRAKKMLKNLRVKAKHNNMEFKIIGLS
DQPCSRQTFTMKVRNGSTEVQTVDITVQEYFKSKQVELTMTYLPCLDVGKPKRPNYLPIE
LCHMLSLQRYTKALSSQQRATLVEKSRQKPQERMRVVTDAVKSNRYDDDPILSSCGIEIE
KQLTRVDGRVLSAPTLVVGNSEDCIPNRGRWNYNNKKLLDPVRIERWAIVNFSARCDMSR
ISRELINCGRTKGIDIERPYTLVDEDSQARRYSPVERVERMFEKVKAHLPGPPEFLLCVL
PDRKNCDIYGPWKKKNLHEMGIVTQCIVPSNKMNDQYFTNVLLKINAKLGGMNSKLALEH
RQMIPVVTQIPTLILGMDVSHGSPGRADIPSIAAVVGSRCWPLISRYRASVRTQSPKVEM
IDSLFKPLDDGKDDGIIRELLLDFYQTSQQRKPSQIIIFRDGVSESQFSQVLNVELNQII
KAYQNMGQGDPPKFTVIIAQKNHHTKLFQANSPDNVPPGTVVDSGIVHPRQYDFYMCAHA
GPIGTSRPIHYHVLLDEIGFPADDLQKLVLSLSYVYQRSTTAISVVAPICYAHLAAAQMG
QFLKFEEFAETSSGSGVHSSSSSAAIPELPRLHAAVCSSMFFC
NT seq
2652 nt
NT seq
+upstream
nt +downstream
nt
atggctgctaaaacgggtggagctgtccaagtgcataaggatgacactgttaaacgcaca
ccgatcgcacggcctagcgttggtcgtgaaggaaagcccattaagttgctgtcaaaccac
tttgttgtgaagcttagaggagttgatgctgtgttttaccaatacagtgtctccatcaaa
tctgaggatgataaggtggtcgatggcaagggtattggccgaaaggtcattgataaactg
ttgcaaacatacagttctgagcttgctgggaaggattttgcatatgatggagagaaatgt
ctatttaccgtgggacctcttccacagaacaactttgagttcactgttatcttggaggaa
acatcttcaagggctgttggtggaagtccagggcacgggagccctagtcaagctgtcaaa
aagagagtaaagcaatcacatcttgcgaaaaaatttgtagtgacgataagttatgcagca
aagattcctctaaagtcggttgctttggcacttcgaggaagcgagtcagagcatgctcaa
gatgctttgagagtccttgacattgttttaaggcaacagcaggctaagcgagggtgtctg
cttgttagacaatcatttttcagtgatgacagtcgaaaccttgtggatttaactggtggc
gttagtggatgtcgtggactccactctagtttccgtactacaattgatggtctatcttta
aacatggatgtttcaaccacaatgattgtgactcctggaccagttattgatttcctcctc
acaaatcaaaatgtcagagacatcagagatatcgactggctcagggccaagaagatgttg
aaaaacctgagagttaaagctaagcacaataacatggagttcaagatcattggccttagt
gatcagccatgctctagacagacattcacaatgaaagttcggaatggaagcactgaagtt
cagactgtggatattactgttcaggaatattttaaatccaagcaggttgaattgactatg
acttatctgccatgtcttgatgtgggaaaaccaaaacgtccaaactatctcccaattgag
ttatgccacatgctatcgcttcaacgttatacgaaggcactgtcttctcaacaaagggca
actttggttgaaaaatcacgacagaaacctcaagaacgaatgcgagttgttacagatgct
gtaaaaagtaatagatatgatgatgatccaatcttatcttcttgtggtattgaaatcgag
aaacaacttactcgtgttgatggtcgtgttctctctgcaccaacgctggttgtgggaaat
agtgaagactgcattccgaacaggggcaggtggaattacaataacaagaagctattggat
cctgtcaggattgagcgttgggcaatcgttaatttttctgctcgttgtgacatgagccgg
atctcaagagagttgataaactgtggacgaaccaaaggcattgatattgaacgtccttac
accttggtggacgaagatagtcaagctaggagatattcacctgttgaaagggttgaaagg
atgtttgaaaaagtgaaagcacaccttcctggtccgcctgaatttctgctgtgtgtttta
ccagacaggaagaattgtgatatttacgggccatggaagaagaaaaatcttcatgaaatg
ggtattgtcactcaatgcattgttcccagtaataagatgaatgatcaatacttcaccaat
gttcttctaaaaattaatgctaagcttggtggaatgaactctaaactggcattggaacat
cgccagatgattccagttgtgactcagatacccacattaattctgggaatggatgtttct
catggttctccaggccgagcagatataccatcaattgctgcggttgttggatctagatgt
tggccactgatatcacggtacagagcatctgttcggacccaatctccaaaggtagagatg
attgattctctatttaagccgctggatgatgggaaggatgacggcataataagggagctt
ctactagacttctaccaaaccagtcaacaaagaaagccttctcagataatcattttcagg
gatggtgtgagcgagtctcaatttagccaagtactgaatgttgaacttaatcaaatcata
aaggcttatcagaatatgggacagggggaccctccgaagttcaccgtgatcattgctcaa
aagaatcaccacacaaaactcttccaagctaattcaccagacaacgttccacctgggact
gttgttgactctggtattgttcatccaagacagtacgatttctacatgtgcgctcatgct
ggaccaattggcacctcaagaccaatccactaccatgtcttgcttgatgagattggcttc
ccagctgatgatctccagaagctagttctttctctttcatatgtgtatcagaggagcacc
actgcaatttctgttgtggcacctatctgttacgcccacctcgcagcagctcagatgggt
cagttcctgaaattcgaggagtttgctgagacctcatctgggagtggtgtccattcatca
tcatcgtcagcagcaatcccagaactgccgcggttgcatgctgctgtctgcagttcgatg
ttcttctgttga
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