Phragmites australis (common reed): 133898699
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Entry
133898699 CDS
T10575
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
paua Phragmites australis (common reed)
Pathway
paua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133898699
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
paua03041
]
133898699
03009 Ribosome biogenesis [BR:
paua03009
]
133898699
Enzymes [BR:
paua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133898699
Spliceosome [BR:
paua03041
]
Complex A
U1 snRNP components
U1 related factors
133898699
Complex B
133898699
Ribosome biogenesis [BR:
paua03009
]
Eukaryotic type
Pre-60S particles
Helicases
133898699
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
HAD_Pex22
Motif
Other DBs
NCBI-GeneID:
133898699
NCBI-ProteinID:
XP_062195360
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All DBs
Position
2:complement(9598671..9601234)
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AA seq
371 aa
AA seq
DB search
MALRGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILAPGDGPIVLVLAPTRELAVQIQQE
ATKFGASSKIKNTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMIESHHTNLRRVTYLV
LDEADRMLDMGFEPQIKKIVSQIRPDRQTLYWSATWPKEVEHLARNFLFDPYKVIIGSEE
LKANHAIVQHVEILSESQKYNKLVNLLEDIMDGSRILVFMDTKKGCDQITRQLRMDGWPA
LSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHR
IGRTGRAGAKGTAYTFFTAANARFAKELINILEEAGQKVSSELAAMGHGAPPPSSGYRDR
YRGYGGGRLWS
NT seq
1116 nt
NT seq
+upstream
nt +downstream
nt
atggcactgaggggtcgtgaccttattggcatcgcagagacaggatcagggaaaactctt
gcttatcttttacctgccattgttcatgtgaatgctcagcctattcttgctcctggtgat
ggtccaattgttctggtgttagctcctacacgtgaacttgctgttcagatacagcaagag
gcaaccaagtttggtgcatcgtcaaagataaaaaatacttgcatatatggtggtgttccc
aaaggtccacaagttcgtgatcttcaaaaaggtgttgaaattgtcatagccacaccagga
cgactaattgatatgatagaatcacatcatacaaacttgcgaagggtcacatatcttgtt
ttagatgaagcagatcggatgctagacatgggctttgaacctcagattaagaaaattgtt
tctcagattcgtccagaccgccaaacactttactggagtgctacctggccaaaggaagtt
gagcatctagcaaggaatttcctttttgacccgtacaaggtgattattggttctgaagag
ttgaaagctaaccatgccattgttcagcatgtggaaattttatctgagagtcagaagtat
aacaagttggttaatttgttggaagatataatggatggcagccgaattttagtatttatg
gacaccaagaagggatgtgatcagatcactagacagcttcgaatggatggttggcctgct
ttgtctatccatggtgacaagagccaagcagaacgggattgggttctttctgaatttaaa
tctgggaaaagtcctattatgacagctactgatgtagctgctcggggcttagatgtcaag
gatgtgaaatatgtcattaattatgactttccgggttcactggaggattatgtccatcgt
attggtcgaactggcagggctggagcaaaaggaacagcttacacctttttcactgcagct
aatgccagatttgccaaggaacttatcaatattttagaagaagctggacaaaaggtcagc
tctgaattagctgcaatgggtcatggtgcgccacccccttcttcaggttaccgtgataga
tatagggggtatgggggtggccgtttgtggagctga
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