Phragmites australis (common reed): 133898713
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Entry
133898713 CDS
T10575
Name
(RefSeq) THO complex subunit 4D-like isoform X1
KO
K12881
THO complex subunit 4
Organism
paua Phragmites australis (common reed)
Pathway
paua03013
Nucleocytoplasmic transport
paua03015
mRNA surveillance pathway
paua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133898713
09122 Translation
03013 Nucleocytoplasmic transport
133898713
03015 mRNA surveillance pathway
133898713
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133898713
03041 Spliceosome [BR:
paua03041
]
133898713
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
133898713
TREX complex
133898713
Spliceosome [BR:
paua03041
]
Complex C
Other components
EJC/TREX
133898713
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
133898713
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_3
YHR127W_C
Motif
Other DBs
NCBI-GeneID:
133898713
NCBI-ProteinID:
XP_062195373
LinkDB
All DBs
Position
18:complement(18613814..18622223)
Genome browser
AA seq
280 aa
AA seq
DB search
MSFYARRGGDRGSGRIQGSGGRGGYVLHGRSGLPPRGPLGVNSRPSARTIAKSFNRTKDM
TWRPDLFNDSMAATGIETGTKLYISNLDYGVSNEDIKELFSEFGHLKRFAVHYDGYGRPN
GTAEVVFTRRSDAIASLKRYNNVLLDGKAMKIEVIGSDLGLPMTPRINVVGASNGRATRT
TVVMMPEFGQRGRGSSSRPLSNPGNRWNRGAFQSGRGRGWGSAPFQARGRGRGQFQARGR
GRGQFQARGRGRGRGRKPEKTADELDKDLETYHVEAMKTD
NT seq
843 nt
NT seq
+upstream
nt +downstream
nt
atgtcattttatgccagaaggggtggagataggggtagtggccgtattcaaggaagtggt
gggcgaggtggatatgtcctgcatggaagatctggactgcctcctcgaggacctcttggg
gttaattcccgaccatctgcacgcacaattgctaagtcatttaacagaaccaaagacatg
acctggagacctgatctatttaatgatagtatggcggctactggaatagaaactggtaca
aaattgtacatttcaaacttagactatggggtttcaaacgaggatataaaggagctgttt
tcagaatttggtcatttgaaacgctttgctgttcactacgatggttatggccgcccaaat
ggcactgcagaggtggtgtttacaaggagaagtgatgcaattgcttcactgaaacgttat
aataatgttctacttgatgggaaagctatgaagatagaagtcattggaagtgacttaggc
ttgcctatgacacctcgtataaatgttgttggggcttctaatggcagagctacaagaaca
acagttgttatgatgcctgagtttggtcaacgtggcagaggttcgagcagtagaccttta
agtaatcccggcaatagatggaaccgtggtgccttccaatctgggagaggccgaggctgg
ggcagtgccccgttccaggcccgaggcaggggccgtggtcagttccaggcccgaggcagg
ggccgtggtcagttccaggcccgaggcaggggccgtggtagggggaggaagcctgagaag
actgcagatgagctggacaaagacctggaaacctatcatgtggaagctatgaaaaccgat
tga
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