Phragmites australis (common reed): 133898823
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Entry
133898823 CDS
T10575
Name
(RefSeq) probable E3 ubiquitin ligase SUD1 isoform X1
KO
K10661
E3 ubiquitin-protein ligase MARCH6 [EC:
2.3.2.27
]
Organism
paua Phragmites australis (common reed)
Pathway
paua04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
133898823
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
paua04121
]
133898823
Enzymes [BR:
paua01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
133898823
Ubiquitin system [BR:
paua04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
March proteins
133898823
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MARCHF6_C
RINGv
MtN3_slv
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
133898823
NCBI-ProteinID:
XP_062195563
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Position
18:complement(61246..67181)
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AA seq
882 aa
AA seq
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MAAAPQEPSGEEEEGDVCRICHLPAEADQPLRHPCACRGTIRFVHDDCLLRWLATRSSRN
STSRCEVCKRVISIAPVYAANAPARLPVSEFMLGLANKLLGWLLLLLSLLFSIYVWEFVM
PLTTVWVWRLAFSRTFAQVRHLLSLRRSTFSASALYGLRFMPSPDTVLACVSIRRAFLRE
LDHLRRINGPARIVADALAPLALWVARVEAHMQHRFGGLDTLQVLALHTVEASLMVVIGD
VAFAFAFGFLPFSLGRIVLCCISPFSFGSVDIDRSYSSTASILLAGYGFIFSLAVFLAGL
HTFQQYSRGERLTVTVFFMDLINWVCWLLSPFRMLPGIHVIVNRTFTFLQQFFRGIICLA
NISLNLTLILVLCPLFFGWLLDICTSKMFGVTISQKFKLLFASSFASTALHWFIGCIYMK
LRSLLSSLLRPVLRLGVSIPFVRFAGGQIKIQFIGEPFYKFYFKMLPDLFLSVICVAMLI
LVPVEIAFNLVPSVFPLDIIYFDPPTQGKAFWQAPRKYAELLSGVLLLRFLIWNTLKYLE
PGALVENVLQYWFATTGQALGLSDLLIAQPDGAGESEIGNSVTPKDQHGRPTEAKVKRRS
VAVRMVLLVALAWLTVMIFNSAVLVAPVSVGRALLLAIPQLPIAGALKFNDLFAFAVGFC
IISTIIAASRDSYAYVTSGRTRLLASIICNWGITALKSSPLLFTWILIIPFLIGLLVDCL
LISPFVVPANEVPVLDFFCTWFLGMQLLKFWTKLVHWTRVVPSLAYFISERWDQKLTRAR
QDGFSGLRAMWVLQDVLMPITVKLVSALCVPYVLAKGVFPRFGYSAAVNSTVHRFAWLGS
LALCALYHLAKVFCRFFVKLHDSIRDERYLIGQRLQNYAGNS
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgccccgcaggagccctccggcgaagaggaagagggggacgtgtgccgcatc
tgccacctcccagccgaggcggaccagcccctgcgccacccctgcgcctgccgcggcacc
atcaggttcgtccatgacgactgcctcctccgatggctcgccaccaggagctcgcgcaac
tccacatccagatgcgaggtctgcaagcgcgtcatctccatcgcccctgtctacgccgcg
aatgctcccgccaggctgcccgtctccgaattcatgctcggcctcgcaaacaagctcttg
ggctggctcctcctcctcctctccctcctcttctccatctacgtctgggaatttgttatg
cccctcaccaccgtctgggtatggcgcctcgccttctccaggaccttcgctcaagtgcga
cacctcctctccctccgccgctctaccttctccgcttccgccctctatggcttgaggttc
atgccctcgccggacaccgtcctggcctgcgtctccattagaagagccttcctcagagag
ctcgaccatcttaggcgcatcaacggcccggccagaatcgtcgctgatgctcttgccccc
cttgcactctgggtggcgcgcgtagaggctcacatgcagcacaggtttggaggattggat
accttgcaagtccttgcgctgcataccgtcgaagcgtccttgatggtggtaataggtgat
gtggcatttgcttttgcttttggttttctccccttctctttggggaggatagtcctatgc
tgcatatcgcctttcagttttggcagtgtggatatagaccgctcctactcttcaacagcc
tcaatacttctagctggatatggatttatcttttcgctggctgtgtttttagctgggctg
catactttccaacaatactcaaggggtgagcgcctaacggtcacagttttcttcatggac
ttgatcaattgggtgtgctggctgcttagcccttttcgaatgctgcctggtatacatgta
attgtcaataggacgttcactttcttgcagcagttcttcagggggatcatatgtttagcc
aatatttctcttaatctaacattgatacttgtattgtgcccattgttctttgggtggttg
cttgatatctgcacatcaaaaatgtttggtgtgacaatatctcagaagttcaaacttcta
tttgcttcatcatttgcttctactgctctgcactggtttattggatgcatctatatgaag
ctgcggtctttactttccagtcttcttcgtccggtattgaggctaggagttagtatcccc
tttgtccgctttgctggaggccaaatcaagatacaatttatcggggaaccattctacaaa
ttttatttcaagatgctgcctgatctttttctcagcgttatctgtgttgcaatgttaatt
cttgttcctgttgaaattgctttcaatttggtaccttctgtgttcccattggacatcatc
tactttgatcctccaactcagggcaaagcattttggcaagcaccacgaaaatatgcagag
ttactctctggtgttcttcttttgaggtttctcatttggaatacactcaaataccttgag
cctggtgcgcttgtggagaatgtactgcagtattggtttgccactactggacaggctctt
ggtctgtcagatttattgatcgcccagcctgatggagctggcgaatccgagattgggaat
agtgtcacaccaaaagaccagcatggtaggcctactgaagccaaggtcaaaaggagatct
gttgcagttcgtatggtgctactcgtggcgttagcatggcttactgtcatgatattcaat
tctgctgtacttgttgctccagtctcagttgggcgtgcattgttgcttgccatccctcag
ctgccaatagcaggtgcattgaagttcaatgatctttttgcttttgctgttggattttgc
atcatatcaactattattgctgcctctagagattcatatgcttatgtgacctctgggaga
acacgccttctggcttctattatctgcaattggggtataactgctttgaagagttctcca
cttttgttcacatggattctcatcattccctttctcattggattgctggttgattgtcta
ctgatatcaccctttgtggtgcctgccaatgaagttccggttctggacttcttctgcact
tggttcctggggatgcaattgctgaaattctggacgaagttggttcattggacaagggtt
gtaccttccctggcctatttcatcagtgaaaggtgggaccagaagctaactcgggcaagg
caggatgggttttcagggctcagggcaatgtgggtcttgcaagatgttttgatgcctatc
accgtgaagctagtgtctgctctgtgtgttccatatgtgctcgcaaaaggcgtcttccca
agatttggctactctgccgccgtgaactctacggtgcaccgttttgcatggttgggcagc
cttgccttatgtgcgctatatcatctagccaaggtattctgcaggttctttgttaaactc
cacgattctataagggatgagcgctatcttatagggcagaggttgcagaactacgctggc
aatagctga
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