Phragmites australis (common reed): 133898846
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Entry
133898846 CDS
T10575
Name
(RefSeq) uncharacterized protein LOC133898846
KO
K15201
general transcription factor 3C polypeptide 3 (transcription factor C subunit 4)
Organism
paua Phragmites australis (common reed)
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paua03021
]
133898846
Transcription machinery [BR:
paua03021
]
Eukaryotic type
RNA polymerase III system
Basal transcription factors
TFIIIC
133898846
TFIIIC, fungi type
133898846
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_19
TPR_8
TPR_2
TPR_7
TPR_14
TPR_1
TPR_CcmH_CycH
TPR_17
TPR_16
ANAPC3
TPR_12
TPR_Slam
TPR_15
TPR_9
ARM_TT21_4th
TPR_11
ARM_TT21_5th
DUF7017
ChAPs
HEAT_Nup120
TPR_NUP160_120_M
ARM_TT21_2nd
Alkyl_sulf_dimr
NatA_aux_su
SNAP
Motif
Other DBs
NCBI-GeneID:
133898846
NCBI-ProteinID:
XP_062195613
LinkDB
All DBs
Position
18:complement(5612339..5628013)
Genome browser
AA seq
902 aa
AA seq
DB search
MSAVTGDGGGQRASVAEEAGDRGRDGEEHDEEFEDEDEEDGYEFGDAEEAMQCVEMAERS
AAARAQDYEALAARKRKALAEELPPREECSKRPRQYELSEAEAATIFDQLMEGFGLRRKR
KSKDTKKRGRKKGTKNKCNPEVIKKLGDATLLFADSKFKEAIPILHEIVRIAPNFSNSYY
LLGSIYIETGEVDKAINFLMLAAYVSPKDASLWKKLIPLALRKKDASLARHCYLKAMRAD
PEDVGLKYGCANIYRELHDYQKAAEIYEQIIRIDPANVFVRKVAAQMYRDCGQIDKAINL
LEDYVNTRTTNIDWSVLDLLISLYLRNNALSEALKQIEKAHLLLGSQHELPVQLQAKEVI
CHAYLGDMKHAEVFLQAVHLEPSEDDTDVIKELASTFENMGQYEYAVKFYLKIENDAVRN
DGSSNVKIAQCYMVLGEKRKAIPYFYKALQSMKDNIDIRVTLSSLLIDEGKTDEAVTLLS
PPKSPELQSTYTPDQQKPWWCDGKVKIQLAKIYYNKGRLEDFLDTIFLPILKTLDVEYAN
RKVRPMKKLPNTVLHERVKVLGEQRPDSVFQGLRPIASPVELQKANRAKKIIEKRAASNV
ELKTDDSRRAKQAPPVPGLLTNTENHQLVLNLCRTLALLQRYSEALQIINRTLKLGNDAL
SDDNKEKLRSLGAQIAYRAPDPSHGFKYVRYVVQQHPYSVSAWNSYYKVTSRIEDGFSHH
FKYILRTREEKTDCVPPIIISGHRFTAISQHQSAARDYLEAYKLEPENPLINLCVGTALI
NLALGFRLQNKNQCIVQAFAFLYRYLRLCGNSQEAFYNIARAYHHIGLNTLAAIYYEKAL
ATEEKDHPIPKLPYEADSCAQQDLRPGYCDVRREAAFNLHLIYKKSGATDLARRILKTYC
SV
NT seq
2709 nt
NT seq
+upstream
nt +downstream
nt
atgtcggctgtgacgggggacggcggcggccagcgagcgtccgtcgcggaggaggcgggg
gatcgcgggcgcgacggggaggaacatgatgaggagttcgaggatgaggatgaggaggat
gggtacgagttcggcgacgccgaggaggcgatgcagtgcgtggagatggcggagcggagc
gctgccgcccgcgcgcaagattacgaggcgctcgcggcgcgcaagcgcaaggccctcgcc
gaggagcttcccccgagggaggaatgttccaagaggccaaggcagtatgagctttcggaa
gcggaagcggcgaccatatttgaccaactgatggaaggcttcggtcttcggcgcaaaaga
aagtccaaagataccaagaaaaggggaagaaagaaaggaacaaagaataagtgcaatcct
gaagttattaaaaagttgggtgatgctactctactttttgctgacagcaaatttaaggag
gcaattcctatacttcatgagattgtgagaattgcaccaaatttttcaaattcatattat
ctacttggtagcatttatatagagactggtgaagtagataaagccataaacttcctgatg
cttgccgcatatgtctccccaaaggatgcatctctgtggaagaaactcattcccttggca
ttgagaaaaaaggatgcttctctggcaagacactgttatttaaaagcaatgagggcagat
ccagaagatgtaggactgaagtatggttgtgctaatatatatcgcgaacttcatgactat
cagaaagctgctgagatatatgagcagataattagaattgatcctgccaatgtattcgtt
cgtaaagtagcagcacagatgtacagagattgtggtcaaattgacaaagctattaatttg
ttggaagactacgtcaatactcgaactactaacattgactggagtgttctagatttattg
atatcactttatctgagaaataatgctcttagtgaagcactaaagcagatcgagaaggca
cacctactattgggatctcaacacgaattaccagtacaattgcaggcaaaagaagtaatc
tgccatgcttatcttggagacatgaaacatgctgaggttttccttcaggctgtgcacttg
gagccatcagaagatgacactgatgtaattaaggagcttgctagcactttcgaaaatatg
ggacaatatgagtatgccgtaaagttttacctgaagattgaaaatgatgctgttcgtaat
gatggtagttcgaatgtcaaaatcgctcagtgctatatggtcttaggggagaaaagaaaa
gctattccttatttttataaagccttacaaagcatgaaggacaatattgatatacgggta
accttatcctctcttcttattgatgagggcaagacagatgaagctgtcactttgctttct
cctcccaaaagtccagagttgcagtctacttatactccagaccaacaaaaaccttggtgg
tgtgatgggaaagtaaagattcagcttgcaaaaatttactacaataaaggcaggctggaa
gacttcttggacacaatttttcttcccattctgaaaacattggatgttgaatatgctaat
cgaaaggtcagaccaatgaaaaagcttccaaatactgttctgcatgaaagagttaaagta
ttgggtgaacagcgtccagatagcgtatttcaaggattgaggccaatagcgtcacctgtg
gagttacaaaaggcaaacagagcaaagaaaattatagagaaaagggcagcttcaaatgtg
gaattgaaaactgatgattcgcgaagagcaaagcaggctcctcctgttcctggtctactg
acaaatacagagaatcatcagctcgtgttaaatctttgtcgaacattagctttgctgcag
cgatattcggaggcactccagattatcaaccgcactctaaaactcggaaatgatgcactc
tccgatgacaacaaagagaaactcagatccttgggtgctcaaatagcgtatagagctcca
gatcccagtcatggatttaagtatgttcgttatgtagttcagcagcacccatattctgtc
tctgcttggaattcctactataaagtgacatcaagaatagaggatgggttttcacatcat
ttcaaatatattcttcggacaagagaagaaaagactgactgtgtgcctcctataattata
tctgggcatcgatttactgctataagtcagcatcaatcagccgctcgggattacctggaa
gcttataagttggagcctgaaaaccctcttattaatctctgtgtaggcaccgccttgatt
aacttggcccttggcttcaggcttcagaataagaaccagtgcatcgtccaagcctttgcg
ttcctctatagatacctgcgcctttgtgggaacagtcaggaagccttctacaacattgct
cgggcataccaccacattggcctgaataccttggcagccatttactatgagaaggcttta
gcaactgaggagaaagatcatcctattcccaagcttccatacgaggctgattcatgtgcg
cagcaggatctgaggccagggtattgcgacgtacgaagagaggctgcgtttaatctgcac
ctaatctacaagaaaagtggagcaactgatcttgcaagaaggattctgaaaacatactgc
agtgtttag
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