Phragmites australis (common reed): 133899350
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Entry
133899350 CDS
T10575
Name
(RefSeq) pre-mRNA-processing factor 39-2 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
paua Phragmites australis (common reed)
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
paua03041
]
133899350
Spliceosome [BR:
paua03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
133899350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
Motif
Other DBs
NCBI-GeneID:
133899350
NCBI-ProteinID:
XP_062196317
LinkDB
All DBs
Position
18:complement(15702385..15714018)
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AA seq
1235 aa
AA seq
DB search
MEQEPEAAASAVPLASDVAAAVDPPSQLDVFKNKVWLLCDSNTTDFDAWVSLINAAEETS
SDDIDVISLVYHSFLLEFPLCYGYWIKYAAHKARLCTKGDVVEVYEQAVQAVPHSIDLWI
SYCGFGICAYEDPAHIRSLFERALFLVGKDYLCYHLWDKYIEFENSQKQLVQLATIYIST
VKFPTKKLHKYYESFRKLVTLLEQEVTCCVAERLSENIHTSETIDAEDSELDISTIIADL
FDQKGGHLRPEALKRYLSVGERLYQRSSKIYKEICCFEASIKRPFFHVKPLDDDQLENWH
QYLDYVEKNGDFDWAVKLYERCLIPCASYSEFWIRYAEYVDAKGGREIANYALGRASSCF
VKGVPTFCMYYAMFKEQIGDAQAARSLFVKASSNFTSGFYANINRLANMEKRMGNTKAAS
EIYETAIEDAMQKQNIDILPDLYSNFAQFIYVASRSIGEAKEVFVKGIKRAPCKPLIKGF
IQFMSTHGGPTEIPLLDSVISNAVTPGSDVSTALSPEDREDISLLFLEFVDLYGGVKELR
KAWARHSKLFPHSTRNISQQYHTTGNSLQENIKRRRTEPLMAAHDHPLEGIRKLKQSSKT
DNCSLTVDKEVESQVDRNTAESGKGHRDAEEQKALENVDSHHEASRTAQEHSDMVHSQLS
LDESGMQLGMQNQMNSLAKEETNQDLSLREQNDKKANSHQAQSEEAPEAELGDCDSPSKA
IVRSIKIDSQDKVIEVSASGHPETVCSKSDSPSGESMPKEGSFSNPARISPELEERQPVK
FQVKIDTEHDVSVSNANPERSDDSPNATQCGREVCALGQESRDHVQSSQPQQLAVCAKPS
SSELAKTKTNALCFQAQLQHQVANSQTHKSNNLPSAGQNMQQQGLSFTMPQNVQTSSQTQ
DQLFAQPNQGNQQYLQMMQGYASQMWQYYQQQLYYLQAQHNQQMQSLQQQQLPTEHLQQN
FMQQVQQLDQQMVLWQQQVQQQQQQLLQQALPIQQQPDKKLGQYHSSSVDTKHEQNKQQQ
QASQMDHQSQQLQQQQLLYFQQQQQQMYVMQQQQQQMYQQQHTQQQQLIQQQYLQQQQFL
SQMPQQQQDSVQQQQQQLFQQQQQQMVLFQQQQQQFIQKQMQQYLQQQQNQQGPKDQNYK
LNPQVLILLYQILMKHDRMEGTGKWSTANNLKHHRVMVPNCGVLNNLSYPTRQLHSHSAQ
INESFWVIHMSSIKRSQNSKPLISVPFGTWIDQNI
NT seq
3708 nt
NT seq
+upstream
nt +downstream
nt
atggagcaggagccggaggccgcggcgtcggccgtgcctctcgcgtcggacgtcgcggcg
gctgtggacccgccgtcgcagctcgatgttttcaagaacaaagtttggttattatgtgat
agcaacacgaccgattttgatgcttgggtgtcattaataaatgctgctgaggaaacatca
tcagatgacatagatgttattagcttggtctaccatagcttcttattggaatttcctttg
tgctacggctactggatcaagtacgcagctcacaaggcacgattatgcacaaaaggagat
gtggtggaggtttatgaacaagctgtccaagcagtacctcattctatcgatctttggatt
agttactgtggctttggtatatgtgcatatgaagaccctgctcacatcagaagtttattc
gagagggctttatttcttgtcggaaaggactatttgtgctatcacctgtgggacaagtac
atagaatttgaaaattctcagaagcagcttgttcagcttgcgaccatttatatcagcaca
gtgaaatttcccacaaagaagctgcacaagtattatgagagttttagaaagttggtaaca
ttattggaacaagaggtgacatgttgcgttgctgaaagattatcagaaaatatacatact
tctgaaacgatagatgctgaagattctgaattggatatatcaactataattgctgactta
tttgaccaaaaaggtggacatcttaggcctgaagcattgaagcggtacttatctgttggg
gagcgtctctaccaaaggtccagtaaaatttacaaagaaatctgttgctttgaggcatcc
ataaaaaggccttttttccatgtcaagccacttgatgatgatcaacttgaaaactggcac
cagtatcttgactatgttgagaagaatggggattttgactgggctgtaaaactttatgag
agatgtttgatcccttgtgctagttattcggagttttggatccgctatgctgagtatgtc
gatgccaaaggtggccgagagattgcaaactatgctcttggtcgagcatcatcatgtttt
gtaaagggagttccaactttctgcatgtattacgcaatgtttaaagagcaaattggtgat
gcacaggctgcacgctctctttttgttaaagcaagcagtaacttcacatcgggtttttat
gcaaatattaataggctggccaacatggaaaaacgcatgggaaatactaaagcagcttct
gagatatatgagacggcaattgaggatgccatgcagaaacagaacatagatatacttccg
gacctgtacagcaattttgcacaatttatatacgtggcaagtcgtagcattggtgaagct
aaagaggtctttgtcaagggaataaaacgggcaccctgtaaaccattgattaagggattc
atacagttcatgagtacgcatggaggacctacagaaatacctcttcttgattctgttatt
tctaatgctgtgactcctggatctgatgtatctacagctttaagccctgaggaccgtgaa
gatatctcactgttgtttttggagtttgttgacctttacgggggtgttaaagaactcaga
aaggcgtgggcccggcacagtaaactgtttcctcacagcactaggaacatatcacagcag
tatcatactactgggaatagcctgcaggagaatatcaagaggagaagaacagaacctttg
atggctgctcatgatcatcctttagaaggtataaggaaattgaaacaatcgtccaaaact
gacaattgttctctgacagttgataaagaggttgagtcacaagtggacaggaacactgcg
gaatcaggaaaaggacacagggatgcagaagagcagaaagcactagagaatgtcgattcg
catcatgaggccagcaggacagctcaggaacacagtgacatggttcacagtcaacttagc
ctggacgaatctggaatgcaacttggaatgcagaaccaaatgaattcacttgctaaagaa
gagactaatcaagacttaagtttacgggaacaaaatgacaagaaagcaaattctcatcag
gctcaaagtgaggaagcccctgaagctgagctaggcgattgtgattctccttccaaagca
attgttcgctccattaagattgattctcaggacaaggtcattgaggtatctgcaagtggt
catccagaaacagtatgctcaaaatctgattcgccatctggagaaagcatgcccaaagaa
ggaagtttttccaatccagctcgaatatctccagagctggaggaaaggcaacctgtgaaa
tttcaggtaaagattgacacggagcatgatgtgtctgtcagtaatgctaacccagagagg
tctgatgatagtccaaatgcaactcaatgtggtagggaagtctgtgcccttggtcaagag
agtcgagaccatgttcagtcttcacagccacaacaacttgcagtctgtgcaaaaccttcc
agctcagaattagcgaaaacaaaaacgaatgcactgtgttttcaagctcaacttcaacac
caggtggctaattctcaaacacacaaatctaataatcttccttcggctggtcaaaacatg
cagcagcaagggctttcttttacaatgcctcagaatgttcaaacatcctcacaaactcaa
gatcaactctttgcacaacctaatcagggaaaccaacagtatctccaaatgatgcaaggg
tatgcatcacagatgtggcaatattaccagcaacagctgtattacctgcaggctcagcac
aatcaacagatgcagagtctgcaacagcagcagcttccaactgagcatcttcagcaaaat
ttcatgcagcaggtacaacaactggaccagcagatggtcctttggcagcaacaagtgcag
cagcagcagcaacaactactacaacaggcactgccaattcagcaacagcctgacaaaaaa
ctgggtcagtatcattcttcttcagtggatactaaacatgagcaaaataaacagcagcaa
caagcatctcaaatggaccatcaaagccaacaattgcagcaacaacagcttctttatttc
cagcagcagcaacaacagatgtatgttatgcagcagcagcagcagcagatgtaccaacaa
cagcatacccagcagcagcagctaattcagcaacagtatctgcagcagcaacagtttcta
tcgcagatgccacagcaacagcaagactcggttcagcagcagcaacagcaactgtttcag
caacaacagcagcagatggttctttttcagcaacagcagcaacagtttatccaaaaacag
atgcagcagtacctgcaacagcaacaaaaccaacaagggcccaaggatcaaaattacaag
ttaaatcctcaggtacttatcttattgtaccaaattctgatgaaacatgacaggatggaa
ggaaccggcaaatggagcacggccaacaatctgaaacatcacagagtgatggttccaaac
tgcggagtgttgaacaatctgagttatcctacccgtcaactccacagtcacagcgctcaa
atcaatgaatcattttgggtcatccatatgtcttctattaaaagatcacaaaattccaag
ccattgatctcagtaccatttggcacttggatcgatcaaaatatttaa
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