Phragmites australis (common reed): 133899440
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Entry
133899440 CDS
T10575
Name
(RefSeq) single-strand DNA endonuclease 1-like
KO
K15338
holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
Organism
paua Phragmites australis (common reed)
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paua03400
]
133899440
DNA repair and recombination proteins [BR:
paua03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
133899440
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Chromo_SEND1
XPG_I
XPG_N
Motif
Other DBs
NCBI-GeneID:
133899440
NCBI-ProteinID:
XP_062196413
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Position
18:complement(136727..141736)
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AA seq
719 aa
AA seq
DB search
MGVKNLWDILDSCKKKLPLQHLQNKKVCVDLSCWLVQLCSAHRSPAFLKDKVYLKNLFHR
IRALLALNCSLIFVTDGAIPSVKLATYRRRLGSTAEAAREDANSQPLTSLRRNKSSEFSR
MIKEAKHLGMALGIPCLDGVEEAEAQCALLDLASLCDGCFTSDSDSFLFGARTVYRDVFI
GDSGYIICYEMEDIEKKLGFGRNSLISLAVLLGSDYSNGVHGFGPEAACRLVKSVGDDAI
LDQILSDGVKATRKCKGKNSGINAGKAGGICPKASTCEVGTSQGSGGQFRDVINAYLEPK
CHSPDSEAVQRACSQRPFLRSQLQQICEQYFEWSPEKTDEYILPKIAERELRRFSNLRST
ASALGTKPLLSEIPVPCPVLAIVKQRKVHGSEYYEVSWRSIDGLQVSVVPGDLVRSACPE
RITEFLEKKDEHKKQKRRARPKKSAQAAVKDVDAQLQELLLGIESESSTFPSTTSGPQTA
DLRTVAPIMDIVDLSSPSPPLRACKIARSRKFSESATVTMDGINLQCQSLVPGTMESQDS
ARLCVEAQNSTQDNDLVDLSSPLPCAAHKPQAAQGLPHCVDAERRALPDISNFPEKGSIL
GASCYKHEAGASSSDVLLEASPLSGHGTRTAATADCSWRSDAENNAVAEAAAIDLSSPSP
VIGVGKLASWDKCRSNNAKNDTDVIEICEADAGSDQSPEHERKARELRLFLRSIRDELY
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgggggtcaagaacctctgggatatcctcgactcctgcaagaagaagctcccgctccag
cacctccagaacaagaaggtgtgcgtggacctgtcctgctggctcgtgcagctctgcagc
gcccaccgctccccggccttcctcaaggacaaggtctacctcaagaaccttttccaccgc
atccgcgccctcctcgccctaaactgcagcctcatcttcgtcacagacggggcgattcct
tcagtcaaattggctacttacaggcgtcggctgggatcaactgctgaggctgctcgagag
gatgcgaactcacaaccattgacttcactgcgtcggaacaagagctcggaattctcacgc
atgattaaagaggcgaagcatctcgggatggccctgggcatcccttgcttggatggagtg
gaagaagcggaagcacagtgcgcgttgctagatttggcctccttgtgtgatggttgtttt
acatcagattcagattcattcctttttggtgcacggacggtttatagagatgttttcata
ggagacagtggttatatcatttgctacgaaatggaagacatagagaaaaagcttggtttc
ggcaggaactcactgatatcacttgcagtgcttcttggtagtgactattccaatggagtt
catggttttggcccggaagcagcatgccggcttgttaagtctgtaggggatgatgccatt
cttgatcaaattctgtctgatggagttaaagctacaagaaaatgtaaaggaaaaaatagt
ggcattaatgcaggaaaggcaggtggcatatgcccaaaagcaagtacctgcgaggttgga
acaagccagggctctggtggtcaatttcgtgatgtaataaatgcatatctggagccaaaa
tgtcattcaccagattcagaagctgtgcagagggcatgtagccagcgtccatttcttcgg
tcacagctgcaacaaatatgtgagcaatactttgagtggagccctgagaagactgatgaa
tatatccttcctaagatagctgagagagaacttcgaaggttttccaatcttcgctcgacg
gcttcagctctaggaacgaaacctttgctgagtgagattccagtaccatgccccgtactg
gcaattgtgaagcagcgaaaagttcatggaagcgaatattatgaggtttcatggagaagc
atagatgggctccaagtttcagttgttccaggggatctcgttagaagtgcatgcccagaa
agaattactgaatttttggaaaagaaggatgagcataagaagcaaaagaggagagctagg
ccaaagaaatcagctcaagctgcagtaaaagatgtcgatgcgcagctccaagaattgctg
cttggcattgaatctgaaagcagtacatttccatctacaaccagtggccctcagacagca
gatctacgcactgtggcaccaatcatggatattgtagatctgtcttctccatctccgcct
ctacgagcttgtaagattgcaagatccagaaaatttagtgaatcggccacagtaaccatg
gatgggattaatctgcagtgccaaagtctggtacctggaacaatggagtcacaggacagt
gcccgtttgtgtgtggaggcacagaattcgacacaggataacgacctggtcgatttatct
tcacccttgccttgtgctgctcataaaccccaggcggctcaaggcttgccacactgtgtg
gatgcagaaagaagagccctccctgatataagcaattttcccgagaaaggcagcatactg
ggcgcttcatgttacaagcacgaagctggagcaagcagcagtgatgtgctgctggaagca
tcacccttgtccggccatggaaccaggacggcagctacagctgattgttcatggagaagc
gatgcagagaataatgcagtagcagaagctgccgcgatagatctgtcgtctccttcacca
gttataggtgttgggaaacttgcgagttgggataaatgtagaagtaataatgctaagaat
gacacggatgttatagagatttgtgaagctgatgctggcagtgaccagtctcctgaacat
gagaggaaagcaagagagctgagattgtttctacgcagtataagagacgaattgtattga
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