Phragmites australis (common reed): 133899811
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Entry
133899811 CDS
T10575
Name
(RefSeq) probable pectate lyase 4
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
paua Phragmites australis (common reed)
Pathway
paua00040
Pentose and glucuronate interconversions
paua01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
133899811
Enzymes [BR:
paua01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
133899811
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
133899811
NCBI-ProteinID:
XP_062196864
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Position
18:complement(9927364..9928818)
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AA seq
371 aa
AA seq
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MGSKELVLVFLFVLHGATANIHGANVIDRCWRGQPNWAANRQRLAVCSVGFAGKMRQNRG
PGVIPYTVTDPGDDPVRPRPGTLRYGATVLAGKVWITFQRSMHIRLAQPLFVKSFTVIDA
RGADVHIAGGAGIVLYQVNNVIIHGLHIHECRTQPAGQVVVPGGAVQPASGMDGDAIRLV
ASSKVWIDHNTLSRCEDGLLDVTVGSTDVTVSNNWFLHHDKVMLLGHDDGHAADRRMRVT
VAFNRFGPNVNQRMPRIRHGYAHVVNNFYDGWRDYAIGGSMGPSVKSQGNLFVASGADNK
KVTRRMPVAGKDWDWHSIGDSFQNGAFFHQTGSRVRPNYKKHQAFAAASADDVRLLTKDA
GALMCSAGSAC
NT seq
1116 nt
NT seq
+upstream
nt +downstream
nt
atgggctccaaagaactcgtcctcgtttttcttttcgtcctccatggtgcaacggccaac
atccatggcgctaatgtgatcgaccggtgctggcgcggccagcctaactgggccgccaac
cgacagaggctcgccgtgtgctcggtgggcttcgctgggaagatgcggcaaaaccgcggc
cccggggtgatcccgtacacggtcaccgaccccggcgacgacccggtgcgcccacggccc
ggcacgctgcggtacggcgcgacagtgctcgccgggaaggtctggatcacatttcagagg
agcatgcacatccggctggcgcagccgctcttcgtcaagagcttcacggtcatcgatgcc
cgcggcgccgacgtgcacattgccggcggcgcgggcatcgtgctctaccaggtgaacaat
gtgatcatccacgggctacacattcacgaatgccggacgcagcccgcggggcaggtggtc
gtccccgggggcgccgtgcagccggcgagcggcatggacggcgacgccatccggttggtg
gccagctccaaggtgtggatcgaccacaacacgctgtcacggtgcgaggacgggctcctg
gacgtgacggtcggctccacggacgtgaccgtctccaacaattggttcctccaccacgac
aaggtcatgctgctcgggcacgacgacgggcacgccgccgaccgccggatgcgcgtcacc
gtcgcgttcaaccgcttcggccccaacgtaaaccagcgtatgccaaggataagacacggt
tacgctcacgtcgtgaataacttctacgatggatggagagactacgccatcggaggaagc
atggggcccagtgtcaagagtcagggcaacctgtttgtagcctccggggcagacaacaag
aaggtgacaagaaggatgccggtcgcggggaaggattgggactggcactccataggggat
tcgttccagaacggcgccttcttccatcagacgggcagcagggtgcgaccgaactacaaa
aagcaccaggcgtttgcggcggccagcgccgacgacgtgaggttgctgaccaaggacgct
ggcgctctcatgtgctctgccgggtccgcgtgctga
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