Phragmites australis (common reed): 133900077
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Entry
133900077 CDS
T10575
Name
(RefSeq) nuclear pore complex protein NUP98A-like isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
paua Phragmites australis (common reed)
Pathway
paua03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
133900077
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133900077
03036 Chromosome and associated proteins [BR:
paua03036
]
133900077
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
133900077
Chromosome and associated proteins [BR:
paua03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
133900077
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleoporin2
Nup98_GLEBS
Motif
Other DBs
NCBI-GeneID:
133900077
NCBI-ProteinID:
XP_062197162
LinkDB
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Position
19:26133025..26139148
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AA seq
910 aa
AA seq
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MFGSTNPFGQSSTSPFGQSSFGTQQGFGQATTAANNPFAPKPFGSPTTTFGAQTGSSLFG
TTSTGAFGQQQSTPTFGTPSSSSPFGSSTPAFGASPTPAFGATSSTFGSGSLFGQKPSFG
GFGSSPSQSSPFGSTFQQTQPSFGSSTFGATTTPAFGTPTTPAFGTPTTPSFGTTTTPGF
GSTSTSLFGASSTPAFGSTAFGSSTPGFGSSGTTAFGASSTPGFGALSTPSFGTSTSAFN
FGSSVSFGQTAASSGSSPFGTTPSPFGAQTSPFGSQTAAPTFGQAQFGNQAGGTRIKPYA
QTPDVDSATSGTQPAAKLDSISAMPEYKDKSHEELRWEDYQRGDKGGPNPSGTPAAAPSF
PSTQPNAFTGAFGQATLNQFPSTATNNPFAAKPSTGFGSTSTSIFNSFNNASAASSSPFP
SSTGSTLFGQSSGSAFPASSSPSLFPNTTPAFAPSSLFGTSSTNANPFSTSLSLANTQSV
GLFQSSPAFVQPPSSTPAFSSGSLFSTPNYGGLSGPSLFSTPTFQPSAPAQTSSMFSFQP
PTQPAPTGGFPGFSNTTNQALIGQPTPSQSNMVMQPAPVPHPFGTLPALPHMSIGNAGSS
PSVQYGISSLPVAEKPLPSRTLSMVVPRHLSHRRIKLLPRKYNPISDGKVPFFADDEESP
STPKADAFFIPRENPRNLIIRPIDQWPSRSGIDRQLIPKDSADLEKYKGTCAGASSESER
DKTDMSPSRPSPVENGNHREPKAVTRHGNGTSVERLMPKLPHADYFTEPSLEELAAKERA
EPGYCCRVRDFVVGRHGYGSIKFLGETDVRGLDLESIVEFNNREVIVYKDDSKKPPVGEG
LNKAAEVTLLNIKCMNKKTGEQYLEGPRVDKYKEMLVKKAEEQGAEFVSFDAAKGEWKFR
VKHFSAYGFW
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atgttcggctccaccaacccattcgggcagtcatccacgagcccattcggccagtcctca
ttcggaacccagcagggattcggccaggctaccactgccgccaacaatcccttcgcacca
aaaccatttggcagcccaaccaccactttcggggcacagactgggagctcactttttggc
actacatccactggcgcctttggccagcagcaatccactcccacgtttggcaccccatcc
tcctcctctccgtttgggagctccacgccagctttcggtgcatcgcccacccctgccttt
ggtgccacatcctccacctttggctctggatctttattcggacaaaagccaagttttggg
ggttttggatcatctcctagccagtcaagtccttttggtagcacgttccagcaaacacag
ccatcatttggcagcagcacttttggtgcaacaactacgccggcattcggcaccccaact
acaccggccttcggcaccccaactacaccttccttcggcaccacaactaccccaggattt
ggttcaacgtcaacatctttatttggtgcttccagcaccccggcgtttggctctacagcc
tttggttcgtccactcctggttttggatcttcaggaactacagcatttggcgcgagcagt
actccaggttttggagctttgagcacgccttcatttggcacatcaactagtgccttcaat
tttggttcttcagtatcatttgggcaaacagcagcttcatccggtagctctccctttggc
acaactccatcacctttcggcgcgcagacttctccttttggctcacagacagcagcgcca
acttttgggcaagcacaatttggtaaccaagctggaggaaccagaataaaaccttatgct
caaacaccagatgttgacagtgctacaagtggtactcagcctgctgcgaaactggattcc
atatcagcaatgcctgaatacaaagacaagagtcacgaagaattgaggtgggaagattac
cagcgtggagacaaaggtggaccaaatccttctggaactccagcagcggcgcctagcttt
ccatctacacaaccgaatgcttttaccggtgcatttggccaagctactttaaaccaattt
ccatcgacagcaacaaacaatccatttgctgctaagccctcaactggctttggttctact
agcacatcaatatttaattcgtttaataatgcatcagctgcaagttcgagtccattccca
tcgtccactggtagcacactatttggacaatcaagtggttctgcatttccagcaagtagt
tcaccatctttgtttccaaataccactcctgcttttgctccgtcttcgttatttggcaca
tcatcaacgaatgcaaatccattcagcactagcttgtcgttggctaacactcagtcagtt
gggctatttcaatcttccccagcatttgtgcaacctccatcaagtacaccggctttctcc
tctggaagcctattcagcacacctaactatggtggtctgagcgggccttcacttttttcg
acaccaacatttcaaccatctgcccctgctcaaacttcaagcatgttctccttccaacct
ccgactcaaccagctcctacaggtggattccctggtttttccaacactacaaatcaggcc
ctgattggacagccaactcctagccagtccaatatggtcatgcagcctgctcctgttccg
catccattcgggacacttcctgcattgcctcatatgtccattggaaatgctggatcttct
ccttcggttcaatatggaatatcaagtttgccagttgctgagaagccacttccgagcaga
acattatccatggtggttcctaggcatttgtcacatagaaggataaaattgctcccaaga
aaatataatccaatatctgatggcaaggttccattctttgctgatgatgaagaatctccg
tcaacaccaaaagctgatgccttcttcatccctagagagaacccgaggaatctgataatc
cgtccaatcgatcagtggccttcacggagtggaatcgacaggcaattgattccaaaggac
tcagctgacttggaaaaatataaaggaacttgtgcaggtgcttcctcagaaagtgagcgt
gataagactgacatgtcaccaagcaggccttctccagtggaaaatggcaatcaccgtgag
cccaaggctgtgactcggcatgggaacggtacttcagttgagaggctgatgcctaagctc
ccacatgcagattacttcacggagcctagcctagaggagcttgccgccaaggaacgtgct
gagccaggctactgctgtcgggtgagggactttgttgttgggcgtcatggttacggcagc
atcaagttcctgggggagacagatgtaaggggcctggatctggagtcaattgtggagttc
aataaccgcgaggtgattgtgtacaaggacgatagcaagaagcccccggtgggtgagggg
ctgaacaaagccgcagaggtgactcttctgaacatcaagtgcatgaacaagaagactggt
gagcagtaccttgagggtccgagggtggacaagtacaaggagatgctggtgaagaaggct
gaggagcagggcgctgagtttgtgtcttttgacgctgccaagggagagtggaagttcagg
gtgaagcacttcagcgcctacgggttttggtga
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