Phragmites australis (common reed): 133900113
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Entry
133900113 CDS
T10575
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
paua Phragmites australis (common reed)
Pathway
paua03018
RNA degradation
Brite
Enzymes [BR:
paua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133900113
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
133900113
Spliceosome [BR:
paua03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
133900113
Complex C
U4/U6.U5 tri-SnRNP related factors
133900113
Ribosome biogenesis [BR:
paua03009
]
Eukaryotic type
Pre-60S particles
Helicases
133900113
Transfer RNA biogenesis [BR:
paua03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
133900113
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
ArAE_1_C
ATPase_2
Motif
Other DBs
NCBI-GeneID:
133900113
NCBI-ProteinID:
XP_062197225
LinkDB
All DBs
Position
19:22873082..22880097
Genome browser
AA seq
988 aa
AA seq
DB search
MGEEADDTGKRKAPDSTEASKRRNISRSCIHEVAVPNGYESAKDDAVHGTLANPAFHGEM
PKKYPFQLDPFQSVSIACLERNESVLVSAHTSAGKTAIAEYAIAMSFRDKQRVIYTSPLK
ALSNQKYRELSQEFSDVGLMTGDVTLQPNATCLVMTTEILRAMLYRGSEVIKEVAWVIFD
EIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICNLHKQPCHVVYTDFR
PTPLQHYVFPIGGSGLYLVVDEDGQFREDNFVKLQDTFTKASNQLDGRKGGGAKASGRIA
KGGSASGNSDIYRIVKMIMERKFQPVIIFSFSRRECEHHAMSMSKLDFNTEEEKDCIEQV
FNNAINCLKEEDKGLPAIELMLPLLKRGIAVHHSGLLPIIKELVELLFQEGLVKALFATE
TFAMGLNMPAKTVVFTSVKKWDGDTNRYIGSGEYIQMSGRAGRRGKDERGICVIMIDEKM
EMSVIKEMVLGKPAPLVSTFRLSYYTILNLMSRVEGQFTAEHVIRNSFHQFQYEKALPEI
VQKITRLENEATLLDSSGETDLAEYHKLGLDISELEKKIMSEMIRPERALLYLVPGRLVK
VRDGSTDWGWGVVVNVVKKPPASGTLHPALSASRSNNYIVDTLLHCSSSSSENGSRSKPC
PPRPGEKGEMHVVPVPLPLVSGISSVRINIPPDLRPPEARQNILFAVQELGKRYPQGLPK
LHPIKDMGIQEPELVDLVHKLEDLEQKQCSHPLHKSGQSEQELSWYHRKAELNHEIQQLK
SKMRDSQLQKFRDELKNRSRVLKMLGHIDADGVLQLKGRAACLIDTGDELLITELMFNGT
FNDLDHHQVASLASCFVPCEKSSEQIRLRSELSKPMMQLQEAARKIAEVQRECKLEVNVE
EYVESTCRPYLMDVIYCWSKGATFGEVIEMTDIFEGSIIRLARRLDEFLKQLKAAAGTVG
EANLEKKFGDASESLNRGIMFANSLYLQ
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atgggggaagaggcggatgacaccggcaagcgcaaggcgccggattcgacggaggcctcc
aagcggcggaacatctcccggtcgtgcatccacgaggtcgccgtcccgaacggctacgag
tcggccaaggacgacgccgtgcacgggacgctcgcgaacccggcgttccacggggagatg
cccaagaagtacccgttccagctcgaccccttccagagcgtctccatcgcgtgcctggag
cggaacgagtccgtactggtgtcggcgcacacctccgcggggaagacggccatcgccgaa
tatgccatcgccatgtcgttcagggacaagcagagggtcatatacacctccccgctcaag
gcactgagcaaccagaagtacagggagctcagccaggagttctctgatgtcgggttgatg
accggcgacgtcacgctccagccaaacgccacatgcctggtcatgacgacagagatcctc
agggcgatgctctacaggggttccgaggtgatcaaggaggttgcctgggttatattcgac
gagatacattacatgaaggatcgtgagagaggagtcgtgtgggaggagagtataattttc
ctgccccctgccatcaagatggtatttctttccgctaccatgtcgaatgcgactgagttt
gctgagtggatatgcaatctgcacaagcagccttgccatgttgtgtatacggacttcagg
ccgacaccactgcagcactatgtgtttccaataggcggctctggtctctaccttgtagtg
gatgaagatggtcagttcagagaggataactttgtgaagctgcaggacacatttactaag
gcaagtaatcaactagatggaaggaagggtggtggagctaaagccagtggccgaattgcg
aaaggtggaagtgcttctgggaattctgacatatacagaattgtcaagatgattatggag
cgcaagtttcaaccagttataattttcagctttagtagaagagaatgtgagcaccatgcc
atgtctatgtcaaaacttgacttcaacactgaagaggaaaaggattgcatcgagcaggtt
ttcaataatgctattaattgtttaaaagaggaagataaaggtttacctgctatagagttg
atgttgcctcttcttaaacgaggtattgcagtacaccattctggactacttccaataatt
aaggaactggtggaattgctctttcaagaaggtcttgtgaaagctctgtttgctactgag
acatttgccatgggtcttaatatgcctgcaaaaacggttgttttcacatctgtcaaaaaa
tgggatggtgatactaaccgctatattggttctggagaatatatacagatgagtggaaga
gctggccgacgcggcaaggatgaacgtggcatttgtgttataatgatagatgagaagatg
gaaatgagtgttatcaaggaaatggtgttaggcaaaccggcacctctcgtcagtactttc
cggctgagctattacactattctgaatttaatgagccgtgtggagggacaatttaccgct
gagcatgtgattaggaattcattccatcagtttcaatatgagaaggcgttgccagaaata
gttcaaaagatcacgaggttggagaatgaagctaccttgcttgattcttctggagagact
gatcttgctgaatatcacaaattggggcttgatatatctgaacttgaaaagaaaatcatg
tctgagatgattagaccagagagggctttgttatatttggttcctggaaggctggttaaa
gtgagggatggttcaacagactggggatggggtgtggttgtaaatgtggtgaagaaacct
ccagcatctgggactctccaccctgcattaagtgcatctcgcagtaataactatatagtg
gataccttacttcactgctcttctagttccagcgagaatggatctcgttcaaagccatgc
ccgcctcgcccaggagagaagggtgaaatgcatgtggtgcctgtaccattacctttagta
tctggtataagcagtgttagaatcaacattcctcctgatctacgaccacctgaagctaga
caaaacatactttttgctgttcaagaactaggaaagcgttacccccaagggctgccgaag
ctacatccaatcaaagacatgggcattcaagaacctgaattagttgacttggttcataaa
cttgaggaccttgagcagaaacaatgctctcacccacttcacaagtctggtcaaagtgag
caggaactatcatggtaccacagaaaagcagagttgaatcatgaaattcagcaactgaag
tcaaagatgcgagattcacagctacaaaaatttagagatgaacttaagaaccggtcacgc
gtactgaagatgcttggtcatattgatgctgatggtgttctccagttaaaggggcgtgct
gcctgtttaatagacacaggggatgagctgcttatcactgaacttatgttcaatggtaca
tttaatgatcttgatcatcatcaagttgcttcccttgctagctgctttgtaccttgtgaa
aagtcgagtgagcaaatacgcttgagaagtgaactttctaagccgatgatgcaacttcag
gaggctgcgagaaaaatagctgaggtacaacgagaatgcaaactggaagtaaatgtggag
gaatatgttgaatcaacctgcagaccctacctgatggatgtcatatactgctggtcaaag
ggggccaccttcggagaggttattgaaatgaccgacattttcgaaggaagcatcataagg
cttgctagaaggctggatgaatttctgaaacagttgaaagcagctgctggaaccgttggg
gaggctaaccttgagaagaagtttggagatgcgagtgagagcttaaatcggggtatcatg
tttgccaactcattgtatctgcaatga
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