Phragmites australis (common reed): 133900122
Help
Entry
133900122 CDS
T10575
Name
(RefSeq) SWI/SNF complex subunit SWI3C homolog isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
paua Phragmites australis (common reed)
Pathway
paua03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
133900122
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paua03021
]
133900122
03036 Chromosome and associated proteins [BR:
paua03036
]
133900122
Transcription machinery [BR:
paua03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
133900122
Chromosome and associated proteins [BR:
paua03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
133900122
PBAF complex
133900122
GBAF(ncBAF) complex
133900122
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
ZZ
Motif
Other DBs
NCBI-GeneID:
133900122
NCBI-ProteinID:
XP_062197236
LinkDB
All DBs
Position
19:complement(22121399..22130866)
Genome browser
AA seq
784 aa
AA seq
DB search
MPRKASSTSDSRKRKRNLNASPSPSKPSTFASAADHSDESDYAATNEDDDNAVPAAAADG
ANGGEVPSEAAASDDPVLDLREAEVLPSAEAISAFPAAKRRVVNRPHPSALALLAAERYS
YCGNISAVAPPVLENISHGQLQVLSGVLPDHPALSTDPDRPSLYVCTPPPLMEGHVVPKQ
FQGRLHVVPKHSDWFSPGTVHRLERQVVPHFFTGKSPGHTPEKYVLLRNKVIVKYLENPG
KRLAFAECQGLVGSTGELYDLSRIVRFLDTWGIINYLATGSVHRGLRMATSLLREEPTGE
LQLLTAPLKSIDGLILFDRPKCSLQAEDFSSLASSSSNSEVADFDAAFADLNGKIRERLS
ESSCSYCLQPLPSLHYQSQKEADIALCSDCFHDARYITGHSSLDFQRVDGNKDGSQNDSD
KWTDEETLLLLEGIEKYSDNWDDIAGHVVTKSKAQCIYHFIRLPVEDGLLENVEVHNAPV
LFRAQSNGYPHSDSNGSTSGNPLQSIQHGNQLPFINSSNPVMSLVAFLASAIGPRVAASC
AHAALSFLTRDDDSRVSSEGMHADGRANGANLNFLSHNGAISSISPENVKHAAMCGLSAA
AMKSKLFADQEEREVQRLVATIINHQLKRLELKLKQFAEVETLLLKECEQVERVRQRIAA
DRVRMRAALLGSTGSGLPGSSSAMPSNPVSMNPRPVAVPGSMPQAGMPASYTNNMQGHVH
PQMPFLHQRQQMLSFGPRLPLAPNQTQPSAQASNIMFNSGMPNSVAANHHQLLRSSSGNN
SSVG
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgcaaggcctcttcgacctcagattcgcgcaagcggaagcgtaacctcaacgcg
tccccctccccttccaagccctccaccttcgcctccgcggccgaccactccgacgagtcc
gactacgccgccacgaacgaggacgatgacaacgccgtccccgctgccgccgcggacgga
gccaacggcggcgaagtcccatcagaggccgcggcgtccgacgaccccgtgctcgacctc
cgcgaggccgaggtgctgccctcggccgaggccatctccgccttccccgccgctaaacgc
cgcgtggtcaaccggccccacccgtccgccctcgccctgctcgcggccgagcgatattcg
tattgcggcaacatctccgccgtggcacccccggtgctagagaacatctcgcatgggcag
ctgcaggtgctctctggggtgcttccagaccaccccgccctttccacagaccccgacagg
ccgtccttgtatgtgtgcacgccgcctcccctaatggaggggcatgtcgtgcccaagcag
ttccagggccgcctccatgtcgtccccaagcactcagattggttctccccggggacagtg
cataggctagaaaggcaggtcgtgccgcacttctttacagggaagtctccagggcacact
ccggagaagtatgtcctgttaaggaataaagttatcgtgaaatacttagagaacccaggc
aagaggcttgcttttgctgagtgccaggggcttgttgggagtacaggtgaactgtatgat
ctgagtaggattgttaggttcttggacacttgggggatcatcaattaccttgcgactgga
tcagtgcaccgtggcctgaggatggcaacgtcgcttctaagggaggaaccaacaggagaa
ttacaattgcttacggcgccattgaaatctattgatggcctaattttgtttgaccggccg
aaatgtagcctccaagcagaggacttttcttcgttggcatcatcttcatcgaattcagag
gtggcggatttcgatgctgcgttcgcagacttgaatggaaagattagggagcgtttgtca
gagagctcttgcagttattgcttgcagcctttgccaagtttgcattaccaatcgcaaaag
gaggcagatattgctctgtgctctgattgcttccatgatgcgagatatattactgggcat
tctagcttagatttccagagagtggatgggaataaagatggatcacaaaatgatagtgat
aaatggactgatgaagaaacattattgctgttggagggcattgagaagtacagtgacaac
tgggatgacattgcagggcatgttgtaacaaaatcaaaggcacaatgtatttaccatttt
attcggcttccagtggaggatggtttattagaaaacgttgaggtacataatgcacctgtg
ctgtttagggcacaaagcaatggttatccacattcagattccaacggcagcacttcagga
aatccactccaaagtattcaacatggaaaccagcttccgttcattaattcttctaatccg
gtcatgtcgctggttgcgtttttggcctctgcaataggaccaagagttgcagcatcatgt
gcacatgcagcattatcttttttgacaagagatgatgattccagggtgagttcagaaggc
atgcatgctgatggtagagccaatggtgcaaatctaaactttctcagccataatggtgcc
atatcatccatttctccagaaaatgtgaaacatgccgccatgtgtggtttgtcagcagca
gcaatgaagtctaaactctttgcggatcaagaggaacgcgaagtccaaagactagtggct
actataataaatcatcagttaaagaggttggagttgaagctgaagcagtttgcggaagtt
gagaccttgcttttgaaggaatgtgagcaagtggagagggtgagacagaggattgcagcg
gaccgcgtccgaatgagagcagcactgttaggttccactggaagtggtctgcctggaagc
agcagcgccatgccatctaatccagtcagcatgaaccccaggccggtggctgtgccaggc
tccatgcctcaggccggcatgccagcctcgtacaccaataacatgcaggggcatgtgcat
ccccagatgccgttcttgcatcagcggcagcagatgctctcgtttggccctcgcctgcca
ctcgcacccaaccagactcaaccgtccgcacaggcatcaaacatcatgttcaactctggc
atgccaaattcggttgctgctaaccaccatcagttactgagatcgtcatctggaaacaat
tcaagtgtaggatag
DBGET
integrated database retrieval system
