Phragmites australis (common reed): 133900405
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Entry
133900405 CDS
T10575
Name
(RefSeq) cleavage stimulating factor 64-like isoform X1
KO
K14407
cleavage stimulation factor subunit 2
Organism
paua Phragmites australis (common reed)
Pathway
paua03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133900405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133900405
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
133900405
U7-dependent histone pre-mRNA processing factors
133900405
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
CSTF2_hinge
CSTF_C
DUF4660
partial_CstF
RRM_7
RRM_10
Motif
Other DBs
NCBI-GeneID:
133900405
NCBI-ProteinID:
XP_062197514
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Position
19:complement(22888919..22897706)
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AA seq
508 aa
AA seq
DB search
MAAAPAGAQNRCVFVGNIPYDATEEQLVQICEEVGPVVSFRLVIDKETGKPKGYGFCEYK
DEETALSARRNLQGYEINGRQLRVDFAENGRNTDRNREKGRGGPGMASSVDTQKQLTGTF
VVGDTSHQPVGLPPAIHAASVMAGVLGAAQTANVQNGLPVQYGLGNDPLTHYLARMSRHQ
LHEIMAELKSLTTQNKELSKNLLQGIPQLPKALFQAQIMLGMVTSQMMQMTKSQQPSSSL
AQSSSHLNEPFPQPDAMISVVSRPSSLPANIPPNPTVLQESTATLHNFPQYQHASQPPVK
MFQHEHQSGVAMFQHEHQSGVAAHPPMLSLPLGGSSNVPTQPTVTSVGLISQVEPPFMPQ
HPRQPVMPTNVQQLPLTHLHLPQVAAAPETLPNEIRVADQASHLAEFPHAPKLRKLEDGT
SVPGMVNNSPPVYNAPSQAVAPSGPSGNYSAGSASFQQPENEVTQLTPDVESALLQQVLQ
LTPEQLSSLPLEQQQQVIQLQKMLSAGN
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgctcccgcgggcgcccagaaccgctgcgtcttcgttggtaacattccatac
gatgcgacggaggagcagcttgtgcagatttgtgaagaagtcggcccagtcgtatccttc
agattggttattgataaagaaactggaaagccaaagggttatggcttttgcgagtacaag
gatgaggagactgctctaagtgcacgccgcaaccttcagggttatgagattaatggtcgt
cagttgcgtgttgattttgctgaaaatgggaggaatactgacagaaatagagaaaagggt
cgtggaggaccaggaatggcatctagtgttgatactcagaaacaattaactgggactttt
gttgttggagatacaagccatcagcctgttggtcttccaccggcaatacatgctgcatct
gtaatggctggcgttcttggtgccgctcaaactgcaaatgttcaaaacggtttacctgtc
cagtatggacttggaaacgaccctcttactcattatttggccagaatgtcaaggcatcag
ttgcatgaaatcatggctgaattgaagtccttaactactcaaaataaggaactttccaaa
aatttgctgcaaggaattccacagctgccgaaggccctatttcaggcacaaataatgctc
gggatggtgacatcacagatgatgcagatgacaaagagccaacagccctctagctccttg
gcacaatcatcatctcacctcaatgaaccatttccacagccagatgctatgatttcagtt
gtctcaagaccatcgagtttgccagctaacataccaccaaacccaactgtcctgcaggaa
tcaacggcaacactacataattttcctcagtatcaacatgcatctcagcctccagtcaaa
atgtttcaacatgaacatcagtctggggtggccatgtttcaacatgaacatcagtctggg
gtggccgcacatcctccaatgctatctctgcccctcggcggttcttccaatgttcctact
caacccactgtgacttcagtaggcttaatctcacaagttgagcccccatttatgccacag
caccctagacaaccagttatgccgacaaatgtacaacagctaccgttgacccatcttcat
ctccctcaggtagctgcagcacctgagacactaccgaatgaaataagggtggctgatcaa
gcaagtcatttggcggagtttcctcatgctccaaagttgagaaaattggaggatggaacc
tctgtgcctggaatggtaaacaacagcccccctgtttataatgctccatctcaagcagtg
gctcctagtggaccatcagggaactatagtgctggttctgctagctttcagcaaccagag
aatgaagtgacgcagctcacacccgacgtggaatcagctcttctgcagcaagtattgcag
ctgacacctgagcagctgagttcattgccattagagcagcagcagcaggtgattcagctc
cagaagatgctatcagctggtaactag
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