KEGG   Phragmites australis (common reed): 133900834
Entry
133900834         CDS       T10575                                 
Name
(RefSeq) WD repeat-containing protein VIP3-like
  KO
K12602  WD repeat-containing protein 61
Organism
paua  Phragmites australis (common reed)
Pathway
paua03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:paua00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    133900834
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:paua03019]
    133900834
Messenger RNA biogenesis [BR:paua03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     133900834
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_Prp19 Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_WDR3_2nd WD40_WDHD1_1st WD40_MABP1-WDR62_2nd WD40_Gbeta WDR55 EIF3I ANAPC4_WD40 Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_EML Beta-prop_RIG_2nd Beta-prop_WDR75_1st WD40_MABP1-WDR62_1st Beta-prop_Aladin Beta-prop_EIPR1 Beta-prop_WDR19_1st Beta-prop_IFT122_1st Beta-prop_TEP1_C NBCH_WD40 eIF2A WDR90_beta-prop_4th Beta-prop_Vps41 WD40_RFWD3 Beta-prop_SPT8 Beta-prop_IFT140_1st Beta-prop_NUP159_NUP214 Beta-prop_DCAF12 Beta-prop_SCAP Beta-prop_WDR41 Ge1_WD40 Beta-prop_WDR35_TULP_N CFAP43_N Beta-prop_DCAF4 Beta-prop_Nup120_160 Beta-prop_VPS8 Tricorn_2nd Beta-prop_RIG_1st WD_LRWD1 WD40_like Beta-prop_ACSF4 Beta-prop_pof12 Beta-prop_WDR11_2nd Beta-prop_LRRK2
Other DBs
NCBI-GeneID: 133900834
NCBI-ProteinID: XP_062198070
LinkDB
Position
19:complement(1146535..1149400)
AA seq 322 aa
MKLAGLKSVDGAHDDSIWAAAWAPASDHRPTALLLTGALDETVRVWRPDDLAAAGGPARG
HALGVVSLAAHPAGSLAAAVSLDSYVRVFDVDSGASVATLEAPPSEVWGVQFHPKGNALA
AAGGGSGSVKLWDTERWQPITSLAVPCPEGARPDKTGSGKFVLSVAWSPDGKLLACGSMD
GTIAVYDTVRMKFLHHLEGHHMPVRSMVFSPVDPHVLFTACDDCHIHIYDTKEKTLIGAM
SGHASWVLSIDVSPDGMAVATGSSDRTVRLWDINMRSSVQTMSNHSDQVWAVAFRPPGGA
GVRAGRLASASDDKSISLYDYS
NT seq 969 nt   +upstreamnt  +downstreamnt
atgaagctcgcggggctcaagtcggtggacggcgcccacgacgattccatctgggcggcg
gcgtgggcacccgcctcggaccaccgccccacggcgctgctcctcactggcgcgctcgac
gagaccgtccgcgtctggcgccccgacgacctcgccgccgccgggggccccgcccgtggc
cacgcgctcggggtcgtctccctcgccgcccaccccgcgggaagcctcgccgccgcggtg
tcgctcgacagctacgtccgcgtcttcgacgtcgactccggcgcctccgtcgccacgcta
gaggcgccgccgtccgaggtctggggcgtccagttccaccccaagggtaatgctctggca
gccgctggtggtggcagtgggtcagtgaagctctgggacacggagaggtggcagccaatc
accagcctcgctgtcccgtgtccggagggagctcgccctgataagacaggcagtggcaag
tttgtcctttcggttgcctggagccctgatggaaagctcttagcttgtgggtccatggat
ggcaccatagctgtgtacgacacagttcgcatgaagttcctccaccaccttgagggccac
cacatgccggtgaggtccatggtgttctccccggtggaccctcatgtgctcttcaccgcc
tgcgacgactgccacatccacatctacgacaccaaggagaagaccctcatcggggccatg
tctgggcatgcgagctgggtgctgagcatagacgtgagccccgacggcatggcggtagcg
acaggctccagtgaccgcacagtccggctttgggacatcaacatgaggtcgtcggtgcag
acgatgagcaaccactcggaccaggtctgggctgtggccttccgaccacctggaggggca
ggagtccgtgcaggacggctcgctagtgcgtcagatgacaagagcatctctctgtacgat
tactcatag

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