Phragmites australis (common reed): 133900912
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Entry
133900912 CDS
T10575
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 40-like isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
paua Phragmites australis (common reed)
Pathway
paua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133900912
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
paua03041
]
133900912
03009 Ribosome biogenesis [BR:
paua03009
]
133900912
Enzymes [BR:
paua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133900912
Spliceosome [BR:
paua03041
]
Complex A
U1 snRNP components
U1 related factors
133900912
Complex B
133900912
Ribosome biogenesis [BR:
paua03009
]
Eukaryotic type
Pre-60S particles
Helicases
133900912
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
133900912
NCBI-ProteinID:
XP_062198179
LinkDB
All DBs
Position
19:complement(713111..720543)
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AA seq
1335 aa
AA seq
DB search
MAALEAAAADSSGPRFAPDDPTLPAPWKGLIDGTTLYYWNPETNVTQYEKPAAAAAAPPL
PVGPPPTTPTQVLESAPGDFSQPSMQFGQTAHQERPGQTGYPQVGQLGQQQPPFQHIVQH
QSSFQQSQQVPYQQQQVPQQPPQYPNTHSRQMPYQHVPYMQPQQQQQGPPYSYQANLHPQ
MPQTAYNQVQQPQMPQAAYNQGQQPPMPQPSYNQGQQPPMPQPSYNQGQKPAIPQSAYNQ
GQQPQMQHGAYNQGQQPPGIRTPQSQVQHPQQSPSFHQPAQASQLPQVSQSQGLQMPPQQ
GQLQHGLQFTPQHGKQPHYGHAGAQLSQVSHGQQGSLLKDGDAGQEGKQTGFSLPLDQQH
SQGPLSNQQLPSSHQHPAAPTQLNIPGVGGPSYPAKHLLGGSTPAESNNMSFMSSPAQMH
QGGVDTNYRQQLVSSHAVPNHIGPSPVRPPVGFEMGNSEGQFERDEVHSYGRFDGTNTLQ
QQPKLAVLPPPQNPLDMRNGPPYPQPDNFGGGYNMAPPHLVPNLHNHGPFPSEASMRPPS
RMFAPQDFPSISSADAYRQHHEVTAMGENVPAPFMTFEATGFPPEILQEIRAAGFLNPTP
IQAQTWPVALQNRDIVAIAKTGSGKTLGYLIPAFIHLRRCQNNPILGPTVLVLAPTRELA
SQIQDEALKFGRSSRVSCTCLYGGASKGPQLRELERGADIVVATPGRLNDILEMKKISLH
QVSLLVLDEADRMLDMGFEPQIRKIVDELPPSRQTLMYTATWPKEVTKIAGDLLRDPIQV
NIGSIDELVANKSITQYVEVVLPLDKQRRLEQILRNQERGSKVIIFCSTKKMCDQLARGI
GRSFGAASIHGDKSQAERDHVLNQFRTGRAPILVATDVAARGLDIKDIRVVINYDFPTGI
EDYVHRIGRTGRAGATGVSYTFFSEQDWKYAGDLVKVLEGANQQVPPQLLDMAARGAPGG
PRNQASGMSRWDGAGGGRFEPGAGGPVNYGGIREGPGRFGGRESTGGFGGRDGPDGFGGR
EGPGGFGGRKGPGGFGGREGPGSSGFGGRGARGSGGFGGRGGASPGGFGGRGGRGDSPGF
GGRGRGDFSGSGGRGRGDSPGFGGRGRGDFSGGRGGRGRGFGGRGRSDRGPHDRYVSDGR
GRFDGRRGFGDKGRDRSYSRSPDRGRSRGYDRRSDSRSLSRSRSCSRSWSRSRSRSSSRS
RSRSRSRDHGTGSERRPRARSGFDVLPPSTGAGPALTGPGPAPAPVPVPVPVPGPAVPPV
SALAPAQSLADTSAMSPMSPGGLVQEATLLMAGNGSNFGSAQTDQPFQGIDAAMPSFPAA
EIFPGAAVQQAAPDV
NT seq
4008 nt
NT seq
+upstream
nt +downstream
nt
atggcggctctagaggctgccgccgccgattcatcaggtcctcggtttgctcctgatgac
ccaacactccctgcgccctggaaagggctaatcgatggcacaacgctgtactactggaac
cctgagacaaatgtgacccagtacgagaagccggccgcggctgcagctgcacctcccttg
ccggtgggtcctccgccgacgactcctacacaggttctagaatcggcaccaggggatttt
tcgcagcctagcatgcaatttgggcagacggcgcaccaggaacgtcctggacagacaggc
tatcctcaggttggccagctcgggcaacagcaaccaccgtttcagcacatagttcaacat
caatcttcctttcagcaatcacaacaggtgccatatcagcagcagcaggtcccgcagcag
ccacctcaataccccaacacacattctcgacaaatgccataccagcatgttccttacatg
caaccccagcaacaacagcaaggcccaccatattcgtatcaggccaacctgcatccacaa
atgccgcaaactgcctacaatcaagttcagcagccacagatgccgcaggctgcctataat
caaggtcagcagccaccgatgccgcaaccttcctacaatcaaggtcagcagccaccgatg
ccgcaaccttcctacaatcaaggtcagaagccagcaattccccagtcagcctacaatcaa
ggtcagcagccacaaatgcaacatggtgcttacaatcaaggtcagcagccaccgggaata
aggacccctcagagtcaagtgcaacaccctcagcaatcaccgagctttcaccaacctgcc
caggcttcacaactgccccaagtttctcaatctcaaggacttcaaatgccccctcaacaa
ggccaactccagcatggcttgcagttcacccctcagcatggaaaacagccacattatggt
catgcaggtgcccagctaagccaagtgtcacatgggcaacaaggttcattgttgaaggat
ggtgacgcaggtcaggaaggtaagcaaactggcttttcattaccacttgatcagcagcac
agtcaaggccctctttcaaaccagcagttaccttctagtcatcaacatcctgcagctcct
actcagctaaatatacctggagttggagggccatcatatccagcaaagcatcttcttggt
ggatcaacccctgctgagtctaataacatgagtttcatgagctcgcctgcacaaatgcat
caaggcggagttgatacaaactaccggcaacaactggttagcagccatgcagttccaaat
catattggtccatcaccagttagacctccagttggttttgagatgggtaatagtgagggt
cagtttgaaagagacgaggttcactcttatggaaggtttgatggaacaaatactctccag
cagcagccaaagctcgctgttctcccacctccacaaaatccactggacatgcgtaatggc
ccaccgtatcctcagccagacaattttggtggtggttataacatggcacctccacattta
gtaccaaatttacataaccatggtccatttcccagtgaagcttcaatgcggccgccatcc
agaatgtttgctccccaagatttcccgagcatctcctcagctgatgcatatcgtcaacac
catgaagtcactgccatgggtgagaacgttcctgctccttttatgacatttgaggccact
ggattccctcctgagatcctgcaagagatccgcgcagctggtttcttaaatcccactcca
attcaagctcaaacatggcctgttgcgctgcaaaaccgggacatagtagctattgccaag
acagggtctgggaagactctggggtacctaattcctgcttttatacatcttagaagatgc
caaaacaatccaatattgggccctacagtgttggttttggcccctactcgtgagcttgct
tcacaaatacaagatgaagcattgaagtttggtcgatcatctagagtctcctgcacatgc
ctgtatggtggagcttcaaagggcccccagttaagagaacttgagcgtggagcagatatt
gtggtagcaacaccaggacgtcttaatgacatcctagagatgaagaagattagcctccat
caagtttcattacttgtgcttgatgaagctgatcgtatgcttgatatgggttttgagcct
cagatacggaagattgtggatgagcttcctcctagtagacagactctgatgtacactgcc
acatggccaaaggaggttacaaaaatagctggggatttactgagagatcccatccaggtc
aacattggcagcattgatgaacttgttgccaacaaatccatcacacagtatgtggaggtg
gttctgcctttggacaagcagcgacgcctagagcagattcttagaaaccaagaaaggggt
tcaaaagtcatcatattctgctcaaccaaaaaaatgtgcgaccagcttgctcgtggcatt
ggtcgcagttttggtgctgcaagtattcatggtgataaatcgcaggctgaaagagatcat
gttctcaatcagtttcgaactggcagggctccaatattagttgccacagatgttgctgct
cgtggacttgacatcaaagatatcagagtggtaatcaattatgactttccaactgggata
gaggactacgtgcatcgcatagggcgcacaggaagggctggggcaactggagtctcgtac
actttcttctctgaacaagattggaaatatgctggtgatttggtgaaagtcttggaaggt
gctaaccagcaggtccctccacagctgttagatatggctgcacgaggtgcgcctggaggt
ccaagaaaccaggcttctggaatgagccgctgggatggtgctggtggtggtcgttttgaa
cctggtgctggtggccctgttaattatggtggaatcagggagggccctgggcgctttggc
ggtcgggagagcactggtgggtttggtggccgggatggccctgatggctttggtggccgg
gagggtcctggtggcttcggtggcaggaagggtccaggtggctttggtggacgggagggt
cctgggtccagtggttttggaggaagaggggcccgaggatctggtggttttggcgggaga
ggtggagcaagccctggtggctttggtggtcgtggtggcaggggtgattctcctggtttt
ggtgggcgtggcaggggtgatttctctggttctggtggacgtggcaggggtgattctccc
ggttttggtggacgaggtcggggagatttctctggtggacgtggtgggagggggcgtgga
tttggtgggaggggacgttctgaccgaggcccacatgatcggtacgtctcagatggacgg
ggaagatttgatggccgtagaggatttggcgacaagggtagggataggagctacagccgt
agcccagatagaggccggtcgcgaggctatgacagaagaagtgatagtaggagcctgagt
aggagcagaagctgcagcaggagctggtcacgtagcaggagtcgcagcagcagccggagt
cgcagcaggagcaggagccgtgaccatggcacgggatcggaacgcaggccccgggcaaga
tccggttttgatgtgcttccaccttcgactggagcaggacctgctttaactggacccgga
cctgcccctgcccctgtgcctgtacctgtacctgtaccaggaccagccgtgcctcctgtt
tctgcacttgcacctgcacaatcacttgccgatacatcagcaatgtcgccaatgtcgccg
ggtggcctggtccaggaggctacactgttaatggcggggaacggcagcaactttggcagt
gcacagacggaccaacctttccaagggattgacgccgcaatgcccagttttcctgcagcc
gaaatattccctggtgcggcagttcagcaggcagcacctgatgtataa
DBGET
integrated database retrieval system
