Phragmites australis (common reed): 133901345
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Entry
133901345 CDS
T10575
Name
(RefSeq) polyadenylate-binding protein 8-like
KO
K13126
polyadenylate-binding protein
Organism
paua Phragmites australis (common reed)
Pathway
paua03015
mRNA surveillance pathway
paua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133901345
09123 Folding, sorting and degradation
03018 RNA degradation
133901345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133901345
03041 Spliceosome [BR:
paua03041
]
133901345
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
133901345
mRNA cycle factors
Stress granule specific factors
133901345
Spliceosome [BR:
paua03041
]
Complex C
Other components
Complex C specific factors
133901345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_occluded
RRM_5
RRM_10
RRM_RdRP1_2
Motif
Other DBs
NCBI-GeneID:
133901345
NCBI-ProteinID:
XP_062198666
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All DBs
Position
20:22626358..22632400
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AA seq
652 aa
AA seq
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MAAQAAGSASEGGSPAAAAAAAAAAAFPATSLYVGDLHESVQDAQLFDVFSQVGSVVSVR
VCRDITSRKSLGYAYVNYNNPADAARALELLNFTPINGKPIRIMYSNRDPSSRKSGAGNI
FIKNLDKSIDNKALYDTFCVFGNILSCKIATDPSGESRGYGFVQFERDEAAQAAIDKLNG
MLINDKKVYVGPFVRKQDRDNVSSNIKFSNVYVKNLSETVTDDELKEMFGKYGTITSAVV
MRDGDGKSRCFGFVNFENSDDAAVAVQELNGKVFDDKELYVGRAQKKSERESELKEKFEK
NLQEVADKYQNTNLYLKNLEDSVDDDKLRELFAEYGTITSCKVMRDSNGVSRGSGFVAFK
SAEDATRALMEMNGKMIGSKPLYVALAQRKEDRKAKLQAQFSQMRPVAIAPSVGPRMPMF
PPGVPGVGQQLFYGQPPPAFINPQAGFGFQQPLMPGMRPGGPMPNFIMPMVQQGQQPQRP
AGRRAGAGGMQQPMPMGGQQQMFPRGGRGYRYPTGRGMPDPGMHGVGSVMPSPYEMGGMP
LRDAGLSQPIPIGALATALANAPPDQQRLMLGENLYPLVDQLEHEQAAKVTGMLLEMDQT
EVLHLLESPEALKAKVAEAMEVLRSAQHLQQTNASPEQQLANLSLNDGVISS
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcaggcggcgggctccgcgtcggagggcggctccccggccgcggctgcggca
gctgcggcggcggctgcgttcccggcgacctcgctgtacgtgggggacctccacgagagc
gtgcaggacgcgcagctcttcgacgtcttcagccaggtcggcagcgtcgtgtccgtgcgc
gtctgcagggacatcacctcccgcaagtcgctcggatacgcctacgtcaactacaacaac
ccggctgacgctgcacgggcactggaactgcttaacttcactcccatcaatgggaagcct
atcaggataatgtattctaaccgtgatcccagctcgcgcaaaagtggtgcaggaaatata
ttcattaagaatcttgataagtcaatagacaacaaagctttatatgacacattctgtgtg
tttggaaacatcctctcgtgtaaaattgcaacagatccttctggagaatcaaggggctac
ggctttgttcagtttgagagggatgaggccgctcaggctgccattgataaactcaatggg
atgcttataaatgacaaaaaagtgtatgttgggccatttgttcgtaagcaggacagggat
aatgtttcaagcaatatcaaattcagtaatgtttatgtaaagaatctgtctgagactgta
actgatgatgagttgaaggagatgtttggaaaatacggaaccataactagtgctgttgtt
atgcgggatggtgatggaaaatccagatgttttggatttgtcaattttgagaattcggat
gatgctgctgtggctgttcaagagttgaatggcaaggtattcgatgataaggaactgtat
gttggaagagcacagaagaagtcggaaagggagtcggagttgaaagaaaaattcgagaag
aaccttcaagaggtagctgataagtaccagaacaccaacctgtatctgaaaaacttggag
gacagtgttgacgatgataagttgcgtgagctctttgctgaatatggtactattacttcc
tgcaaggttatgcgggattcgaatggtgtcagcagaggctctggatttgttgctttcaaa
tctgctgaagatgctacccgagctctcatggaaatgaatggcaagatgattggcagcaaa
ccactttatgttgcacttgcacaacgcaaggaagacagaaaggcaaagctacaggcacag
ttttcacagatgcgtcctgttgcaatagctccttcagttggtcctcgcatgcctatgttc
cctcctggtgttcctggagttggtcagcagctgttttatggtcagccacctccagccttt
atcaaccctcaggctggatttggcttccagcaacctctcatgcctgggatgaggcctggt
ggtccaatgccaaactttatcatgcctatggttcagcagggacagcaaccgcagcgtcca
gctggtaggcgtgctggcgctggcggaatgcagcaacccatgccaatgggtggtcagcaa
cagatgtttcctagaggtggtcgtggctaccgctatcccactggacgtggaatgcctgat
cctggcatgcatggtgttggcagtgtgatgccatctccatatgagatgggtgggatgcct
cttagagatgctggtctgtcacagcctattccaattggtgcactagccactgctcttgct
aatgcaccccctgatcagcagagactgatgcttggtgagaacctatatcctcttgttgat
cagctggagcatgagcaggctgccaaagtgactggcatgcttctggagatggaccagacc
gaggtcctgcacctgctggagtcaccagaagctctcaaggccaaggttgctgaagccatg
gaggttctccgctccgctcagcatctccagcagaccaacgcctcccctgagcagcagctg
gcaaatctctcgctgaacgacggtgtcatttccagctga
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