Phragmites australis (common reed): 133901387
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Entry
133901387 CDS
T10575
Name
(RefSeq) uncharacterized protein LOC133901387
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
paua Phragmites australis (common reed)
Pathway
paua03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133901387
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paua03021
]
133901387
03019 Messenger RNA biogenesis [BR:
paua03019
]
133901387
Transcription machinery [BR:
paua03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
133901387
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
133901387
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_PCFS4
CID
zf-C2H2
Motif
Other DBs
NCBI-GeneID:
133901387
NCBI-ProteinID:
XP_062198738
LinkDB
All DBs
Position
20:416650..422541
Genome browser
AA seq
1086 aa
AA seq
DB search
MRASASASAAPMETSTSARRSAAPEPGAKKPRLAQPPPRDPRSYAAGSNGSSASASAAEQ
ALVDELLAQYRTALAELTFNSKPIITNLTIIAGENLQAAKPIAALICANILEVPIEQKLP
SLYLLDSIVKNIGKDYIKHFSPRLPEVFCKAYKQVDPSIHHSMRHLFGTWKGVFPPAPLQ
MIEKELGFQSPANGSSGAAPSRPDSQSQRPSSSIHVNPKYLEARQQLNQPTKGMLRSGVK
TAVIADAGDDIERANRIGTDRTAGRRLDAPNARPNIQRTQRDPYSNPVHEKQAVRDVSCL
GFSNISQQPVVGAGQIRSKSKGEDGIGGPYYSAGVGSSEEQFDRRSNFYANKDVRPSGSV
RLDSALLPTPSSNSDRIGRPSSNKSWKHSVEEEYMWDDVHSQGADYGGTNTGRKGEWMAD
DGNAKFANFQRAKWAELGTVEHLDHKSHKLDNLPRFGHATGQDRRVATYMDQEEYLHGKR
EVEARLDKEMRPDGQQFPLPRGSSHWVSLEKPLPDLGLDPRISRFSKQPSDRSTIYTGTM
SASITSSVPVALSGPYAGRSSLDSSTSVPTRSNETIGQQKHRYWSSSPSPVHSPSSTAPF
GRQRSPSPAEPDFYPSKSFSQLGQNPQEEYNQRALLAVAKDSHVLAQNTGLPQGQHNLQA
TPSSGPQQPQKHSTLPSKSHLKPTDQVQTSFSHENSSSMFRPSIQHPLPMGSGHQQLGEG
SLPSDSTPISSDLTSTTNLLAGLIKSGFKPNNPSDLVASLRTHPLLPSGPPSNAFLAVSS
SLKSSASENTTSQTQAPNSACPPLPPGVPPPSSVFSTQIAEEVAPLSSLLSSLVAKGLIS
SPSTDSSAAVPSRPNKPSSLNTPDASASAIPLPIVKPSGGKQTSNPDSSALTNTLVPKPV
EIKAGDLIGLEFKLETLRKYHEPVISSLFDDQSHQCKTCGQRFRLEEELSSHTTCRGSRE
SEIIYVGIAPKRWYPSKNNYIDGSHEVENSAELSAACDADLGPAEEVCEFMVPADENQII
CALCGEPFDDIYSIERGYWMYKDAILLFYPKGEGSRGNSVEGKKEHVPIVHARCMPRSSN
DGMEVD
NT seq
3261 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgcctccgcctccgcctccgcggcccccatggagacctccacctccgcccgtaga
tccgccgcgcccgaacctggggccaagaagccgcgcctcgctcagccgccgccgcgggac
cccagatcttacgccgccggctccaatggcagctcggcctccgcgagcgccgccgagcag
gcgctagttgacgagctgctcgcgcagtaccggacggcgctcgcggagcttaccttcaac
tccaagcctatcatcaccaacctcaccatcatcgctggcgagaacctccaggccgccaag
cccatcgccgccctcatctgcgccaacatcctcgaggttccaattgaacagaagctacca
tctctatatctacttgacagtattgtcaagaatattggaaaagattacattaaacatttt
tctccaagattacctgaggtgttctgcaaggcatacaaacaagttgatccttctatacat
catagcatgaggcacctttttggaacatggaaaggggtgtttcctccagcaccactccaa
atgattgagaaggaacttggttttcagtcacctgccaatggatcgtcaggtgctgcacca
tcaaggcctgattctcagtcccagcgcccatccagtagcattcatgtaaatccaaaatat
ttggaagcgaggcagcagctcaatcaaccaactaaggggatgctgagaagcggtgtcaag
acagctgtaattgctgatgctggtgatgatattgagagggctaacaggataggtactgat
agaactgcagggcgacgcttagatgctccgaatgctaggcctaacatacagcgcactcag
agggacccttacagcaatcctgttcatgagaaacaggcagtcagagatgtgagttgcctt
ggattctctaacatttcacagcagcctgttgtgggagctggtcaaattcgctcaaaatct
aaaggtgaagatggaattggggggccatattattctgctggtgttggctcttctgaagaa
caatttgacaggcgcagcaacttttatgcaaacaaggatgttcggccatcaggatctgta
cgtttggatagtgcacttctcccaactccttcaagtaattccgatagaattggtaggcct
tcatcaaacaaaagttggaagcactctgtggaagaagagtatatgtgggatgatgtacat
tctcaaggagcagattatggtggtaccaatactggaagaaaaggagaatggatggctgat
gacggcaatgctaagtttgcaaactttcaaagggctaaatgggcagagctgggaactgtt
gaacatctcgaccacaaatcacataaactagataacttaccaagatttggacatgcaaca
ggtcaagatagaagagtcgcaacatatatggatcaggaagagtaccttcatggtaagcgt
gaggtggaagctagacttgataaggaaatgaggcctgacggacaacagttcccactacct
cgaggttcctctcactgggtgtccctggaaaaaccacttccagaccttgggcttgatcct
aggatatcacggttttccaagcagccatcagacaggtctaccatttatactggcactatg
tcagcgagtatcacttcatctgtacctgttgcattatcaggaccctatgctggaagatca
agcctagatagttcaactagtgtgccaacaagatcaaacgagactattgggcagcaaaaa
catagatactggtcatcttccccatcacctgttcactcaccttcatctactgcacccttt
ggacgtcagcgttccccaagtcctgctgagcctgatttttatccttcaaaatcattttct
caattgggtcaaaatcctcaagaagaatataaccaaagagcactgctggcagttgctaaa
gattctcatgtcttggcacaaaatactgggcttcctcaaggtcaacataatctacaggca
accccttcatcgggcccccagcagccgcaaaagcactctaccttaccttcaaagtcacat
ctcaagccaactgatcaagtgcagacaagcttttcacatgaaaattcttcatcgatgttt
agaccttctatccagcatcctcttcctatgggctcaggtcaccagcagcttggagaaggc
tccttgcccagtgattccacccctataagctcagatctgacgagcactaccaatttgttg
gctggtctaataaagagtgggttcaagccaaataatcccagcgatcttgttgcaagcttg
aggacacatcctcttcttccaagtgggccaccttcgaatgcatttttggctgtttcctca
tcgcttaaaagttcagctagcgaaaataccacttcgcaaacacaggcaccgaactctgcg
tgcccacctttgccaccaggtgtgccaccaccatcatctgttttttcaacgcagattgca
gaggaagttgcaccactctcaagccttctcagttccctggttgcaaagggactaatttct
tcaccatccactgattcatctgctgcagttccatcacggccaaataaaccatcaagtctt
aacaccccagatgcctctgcttcagctatacctttgccaattgtcaagccttcaggtggc
aagcagacatctaatcccgattcatctgccttgacaaacactttggtccccaaacctgtg
gaaatcaaggcaggagaccttattggtcttgagttcaagctagaaacacttcggaagtac
catgagcctgtgattagcagcctatttgatgaccaaagtcatcagtgcaaaacatgtggc
caaagattcaggcttgaagaggaactcagctcgcacacgacgtgccgcggatcgagggag
tctgagattatctatgttggtatcgcacctaaaagatggtaccctagcaagaacaattac
attgatggatcacatgaagtggagaacagcgctgagttatctgctgcttgtgacgcggat
ttaggtcctgccgaggaagtgtgtgagtttatggtccctgcagatgagaaccaaatcatc
tgtgcactatgtggggagccatttgatgacatttattccatcgagaggggttactggatg
tacaaggatgctatccttttgttttacccgaagggagaaggcagccgtggaaacagtgtt
gagggtaaaaaggagcacgtgcccattgtacacgcaagatgtatgccgagaagctcaaat
gatggcatggaggtggattag
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